Table 1

Packages and classes

Logical
DesignElement
BioAssay
HigherLevelAnalysis
Extendable
DesignElement
BioAssay
BioAssayDataCluster
Describable
Feature
PhysicalBioAssay
Node
Identifiable
Reporter
BioAssayTreatment
NodeContents
NameValueType
CompositeSequence
ImageAcquisition
NodeValue

Position
BioAssayCreation

AuditAndSecurity
FeatureLocation
Hybridization
Measurement
Audit
CompositeCompositeMap
Image
Measurement
Contact
ReporterCompositeMap
Channel
Unit
Organization
FeatureReporterMap
FeatureExtraction
TemperatureUnit
Person
CompositePosition
MeasuredBioAssay
MassUnit
Security
ReporterPosition
DerivedBioAssay
VolumeUnit
SecurityGroup
FeatureInformation

DistanceUnit

MismatchInformation
BioAssayData
TimeUnit
Description

BioAssayData
QuantityUnit
Description
Array
Transformation
ConcentrationUnit
OntologyEntry
ArrayManufacture
DerivedBioAssayData

ExternalReference
Array
MeasuredBioAssayData
Protocol
DatabaseEntry
ArrayGroup
BioAssayDimension
Protocol
Database
Fiducial
QuantitationTypeDimension
Hardware

ArrayManufactureDeviation
DesignElementDimension
Software
BioSequence
FeatureDefect
FeatureDimension
Parameterizable
BioSequence
ZoneDefect
ReporterDimension
Parameter
SeqFeature
PositionDelta
CompositeSequenceDimension
ProtocolApplication
SeqFeatureLocation
ManufactureLIMS
BioDataCube
HardwareApplication
SequencePosition
ManufactureLIMSBioMaterial
BioDataTuples
SoftwareApplication
CompositePosition

BioAssayDatum
ParameterizableApplication
ReporterPosition
BioMaterial
QuantitationTypeMapping
ParameterValue

BioMaterial
QuantitationTypeMap

ArrayDesign
BioSource
DesignElementMapping
QuantitationType
ArrayDesign
BioSample
DesignElementMap
QuantitationType
CompositeGroup
LabeledExtract
BioAssayMapping
StandardQuantitationType
ReporterGroup
Treatment
BioAssayMap
SpecializedQuantitationType
DesignElementGroup
BioMaterialMeasurement

PresentAbsent
FeatureGroup
CompoundMeasurement
Experiment
MeasuredSignal
PhysicalArrayDesign
Compound
Experiment
DerivedSignal
ZoneGroup

ExperimentDesign
Ratio
ZoneLayout

ExperimentFactor
ConfidenceIndicator
Zone

FactorValue
Pvalue



Error



ExpectedValue

Bold indicates packages and italics indicates abstract classes.

Spellman et al. Genome Biology 2002 3:research0046.1   doi:10.1186/gb-2002-3-9-research0046