Figure 4.

Phylogenetic tree of the domain instances generated from the multiple alignment shown in Figure 2. Bootstrapping values range from 0 to 100. The labels indicate the sequence and position of the repeat in the sequence. Domains from the same sequence have identical color (for example, all B_hal1 repeats are red). Domains from sequences of the same species have similar colors (for example, the S. aureus domains are colored in different hues of green).

Andrade et al. Genome Biology 2002 3:research0047.1   doi:10.1186/gb-2002-3-9-research0047