Computational discovery of sense-antisense transcription in the human and mouse genomes
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* Corresponding author: George M Church for_email_look@arep.med.harvard.edu
Genome Biology 2002, 3:research0044-research0044.14 doi:10.1186/gb-2002-3-9-research0044
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Rathi D Thiagarajan, Nicole Cloonan, Brooke B Gardiner, Tim R Mercer, Gabriel Kolle, Ehsan Nourbakhsh, Shivangi Wani, Dave Tang, Keerthana Krishnan, Kylie M Georgas, Bree A Rumballe, Han S Chiu, Jason A Steen, John S Mattick, Melissa H Little, Sean M Grimmond BMC Genomics 2011, 12:441 (5 September 2011) |
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Non-random retention of protein-coding overlapping genes in Metazoa Giulia Soldà , Mikita Suyama, Paride Pelucchi, Silvia Boi, Alessandro Guffanti, Ermanno Rizzi, Peer Bork, Maria Tenchini, Francesca D Ciccarelli BMC Genomics 2008, 9:174 (16 April 2008) |
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Overlapping genes in the human and mouse genomes Chaitanya R Sanna, Wen-Hsiung Li, Liqing Zhang BMC Genomics 2008, 9:169 (14 April 2008) |
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Uncovering information on expression of natural antisense transcripts in Affymetrix MOE430 datasets Sebastian Oeder, Joerg Mages, Paul Flicek, Roland Lang BMC Genomics 2007, 8:200 (28 June 2007) |
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Methodology article
Fadia Haddad, Anqi X Qin, Julie M Giger, Hongyan Guo, Kenneth M Baldwin BMC Biotechnology 2007, 7:21 (4 May 2007) |
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Prediction of trans-antisense transcripts in Arabidopsis thaliana Huan Wang, Nam-Hai Chua, Xiu-Jie Wang Genome Biology 2006, 7:R92 (13 October 2006) A genome-wide screen for trans-natural antisense transcripts in |
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Research article
In silico discovery of human natural antisense transcripts Yuan-Yuan Li, Lei Qin, Zong-Ming Guo, Lei Liu, Hao Xu, Pei Hao, Jiong Su, Yixiang Shi, Wei-Zhong He, Yi-Xue Li BMC Bioinformatics 2006, 7:18 (13 January 2006) In silico analysis that finds 568 human natural antisense transcripts, of which over 400 have not been reported before, also supports a connection between alternative splicing and antisense-directed regulation.
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Research
Antisense transcripts with rice full-length cDNAs Naoki Osato, Hitomi Yamada, Kouji Satoh, Hisako Ooka, Makoto Yamamoto, Kohji Suzuki, Jun Kawai, Piero Carninci, Yasuhiro Ohtomo, Kazuo Murakami, Kenichi Matsubara, Shoshi Kikuchi, Yoshihide Hayashizaki Genome Biology 2003, 5:R5 (11 December 2003) In this study, 687 sense-antisense transcript pairs from 32,127 full-length rice cDNA sequences were identified by aligning the cDNA sequences with rice genome sequences. The large number of pairs suggests that gene regulation by antisense transcripts occurs in plants and not only in animals. |
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Methodology article
Expressing functional siRNAs in mammalian cells using convergent transcription Nham Tran, Murray J Cairns, Ian W Dawes, Greg M Arndt BMC Biotechnology 2003, 3:21 (6 November 2003) |
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Alasdair J Edgar BMC Genomics 2003, 4:18 (7 May 2003) |
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Jonathan B Weitzman Genome Biology 2003, 4:spotlight-20030319-01 (19 March 2003) A computational analysis predicts over 1,500 human genes that may be regulated by antisense transcripts. |
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A Drosophila full-length cDNA resource Mark Stapleton, Joe Carlson, Peter Brokstein, Charles Yu, Mark Champe, Reed George, Hannibal Guarin, Brent Kronmiller, Joanne Pacleb, Soo Park, Ken Wan, Gerald M Rubin, Susan E Celniker Genome Biology 2002, 3:research0080-0080.8 (23 December 2002) This article is part of a collection on Release 3 of the... High-quality full-insert sequence for 8,921 putative full-length cDNA clones in the |