Design and implementation of microarray gene expression markup language (MAGE-ML)

Paul T Spellman¹ , Michael Miller², Jason Stewart³, Charles Troup⁴, Ugis Sarkans⁵, Steve Chervitz⁶, Derek Bernhart⁶, Gavin Sherlock⁷, Catherine Ball⁷, Marc Lepage⁸, Marcin Swiatek⁹, WL Marks¹⁰, Jason Goncalves¹⁰, Scott Markel¹¹, Daniel Iordan¹⁰, Mohammadreza Shojatalab⁵, Angel Pizarro¹², Joe White¹³, Robert Hubley¹⁴, Eric Deutsch¹⁴, Martin Senger¹⁵, Bruce J Aronow¹⁵, Alan Robinson⁵, Doug Bassett², Christian J Stoeckert Jr¹² and Alvis Brazma⁵

¹  Department of Cell and Molecular Biology, University of California at Berkeley, Berkeley, CA 94720-3206, USA

²  Rosetta Biosoftware, 113th Ave NE, Kirkland, WA 98034, USA

³  Open Informatics, Arizona St SE, Albuquerque, NM 87108, USA

⁴  Bioscience Research - Agilent Technologies, Deer Creek Rd, Palo Alto, CA 94304, USA

⁵  European Bioinformatics Institute, EMBL Hinxton Outstation, Cambridge CB10 1SD, UK

⁶  Affymetrix, Inc., Vallejo St, Emeryville, CA 94608, USA

⁷  Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305-5120, USA

⁸  Molecular Mining Corporation, Rideau St, Kingston, ON K7K 2Z8, Canada

⁹  Imaging Research Inc., Glenridge Ave, St. Catharines, ON L2S 3A1, Canada

¹⁰  Iobion Informatics LLC, North Torrey Pines Road, La Jolla, CA 92037, USA

¹¹  LION bioscience Inc., Executive Drive, San Diego, CA 92121, USA

¹²  Center for Bioinformatics, University of Pennsylvania, Guardian Drive, Philadelphia, PA 19104, USA

¹³  The Institute for Genomic Research, Medical Center Drive, Rockville, MD 20850, USA

¹⁴  Computational Biology, Institute for Systems Biology, North 34th St, Seattle, WA 98103-8904, USA

¹⁵  CHRF, Burnet Ave, University of Cincinnati College of Medicine, Cincinnati, OH 45229, USA