Table 1

Packages and classes

Logical

DesignElement

BioAssay

HigherLevelAnalysis

Extendable

DesignElement

BioAssay

BioAssayDataCluster

Describable

Feature

PhysicalBioAssay

Node

Identifiable

Reporter

BioAssayTreatment

NodeContents

NameValueType

CompositeSequence

ImageAcquisition

NodeValue

Position

BioAssayCreation

AuditAndSecurity

FeatureLocation

Hybridization

Measurement

Audit

CompositeCompositeMap

Image

Measurement

Contact

ReporterCompositeMap

Channel

Unit

Organization

FeatureReporterMap

FeatureExtraction

TemperatureUnit

Person

CompositePosition

MeasuredBioAssay

MassUnit

Security

ReporterPosition

DerivedBioAssay

VolumeUnit

SecurityGroup

FeatureInformation

DistanceUnit

MismatchInformation

BioAssayData

TimeUnit

Description

BioAssayData

QuantityUnit

Description

Array

Transformation

ConcentrationUnit

OntologyEntry

ArrayManufacture

DerivedBioAssayData

ExternalReference

Array

MeasuredBioAssayData

Protocol

DatabaseEntry

ArrayGroup

BioAssayDimension

Protocol

Database

Fiducial

QuantitationTypeDimension

Hardware

ArrayManufactureDeviation

DesignElementDimension

Software

BioSequence

FeatureDefect

FeatureDimension

Parameterizable

BioSequence

ZoneDefect

ReporterDimension

Parameter

SeqFeature

PositionDelta

CompositeSequenceDimension

ProtocolApplication

SeqFeatureLocation

ManufactureLIMS

BioDataCube

HardwareApplication

SequencePosition

ManufactureLIMSBioMaterial

BioDataTuples

SoftwareApplication

CompositePosition

BioAssayDatum

ParameterizableApplication

ReporterPosition

BioMaterial

QuantitationTypeMapping

ParameterValue

BioMaterial

QuantitationTypeMap

ArrayDesign

BioSource

DesignElementMapping

QuantitationType

ArrayDesign

BioSample

DesignElementMap

QuantitationType

CompositeGroup

LabeledExtract

BioAssayMapping

StandardQuantitationType

ReporterGroup

Treatment

BioAssayMap

SpecializedQuantitationType

DesignElementGroup

BioMaterialMeasurement

PresentAbsent

FeatureGroup

CompoundMeasurement

Experiment

MeasuredSignal

PhysicalArrayDesign

Compound

Experiment

DerivedSignal

ZoneGroup

ExperimentDesign

Ratio

ZoneLayout

ExperimentFactor

ConfidenceIndicator

Zone

FactorValue

Pvalue

Error

ExpectedValue


Bold indicates packages and italics indicates abstract classes.

Spellman et al. Genome Biology 2002 3:research0046.1-research0046.9   doi:10.1186/gb-2002-3-9-research0046

Open Data