Table 1 |
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|
Packages and classes |
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|
Logical |
DesignElement |
BioAssay |
HigherLevelAnalysis |
|
Extendable |
DesignElement |
BioAssay |
BioAssayDataCluster |
|
Describable |
Feature |
PhysicalBioAssay |
Node |
|
Identifiable |
Reporter |
BioAssayTreatment |
NodeContents |
|
NameValueType |
CompositeSequence |
ImageAcquisition |
NodeValue |
|
Position |
BioAssayCreation |
||
|
AuditAndSecurity |
FeatureLocation |
Hybridization |
Measurement |
|
Audit |
CompositeCompositeMap |
Image |
Measurement |
|
Contact |
ReporterCompositeMap |
Channel |
Unit |
|
Organization |
FeatureReporterMap |
FeatureExtraction |
TemperatureUnit |
|
Person |
CompositePosition |
MeasuredBioAssay |
MassUnit |
|
Security |
ReporterPosition |
DerivedBioAssay |
VolumeUnit |
|
SecurityGroup |
FeatureInformation |
DistanceUnit |
|
|
MismatchInformation |
BioAssayData |
TimeUnit |
|
|
Description |
BioAssayData |
QuantityUnit |
|
|
Description |
Array |
Transformation |
ConcentrationUnit |
|
OntologyEntry |
ArrayManufacture |
DerivedBioAssayData |
|
|
ExternalReference |
Array |
MeasuredBioAssayData |
Protocol |
|
DatabaseEntry |
ArrayGroup |
BioAssayDimension |
Protocol |
|
Database |
Fiducial |
QuantitationTypeDimension |
Hardware |
|
ArrayManufactureDeviation |
DesignElementDimension |
Software |
|
|
BioSequence |
FeatureDefect |
FeatureDimension |
Parameterizable |
|
BioSequence |
ZoneDefect |
ReporterDimension |
Parameter |
|
SeqFeature |
PositionDelta |
CompositeSequenceDimension |
ProtocolApplication |
|
SeqFeatureLocation |
ManufactureLIMS |
BioDataCube |
HardwareApplication |
|
SequencePosition |
ManufactureLIMSBioMaterial |
BioDataTuples |
SoftwareApplication |
|
CompositePosition |
BioAssayDatum |
ParameterizableApplication |
|
|
ReporterPosition |
BioMaterial |
QuantitationTypeMapping |
ParameterValue |
|
BioMaterial |
QuantitationTypeMap |
||
|
ArrayDesign |
BioSource |
DesignElementMapping |
QuantitationType |
|
ArrayDesign |
BioSample |
DesignElementMap |
QuantitationType |
|
CompositeGroup |
LabeledExtract |
BioAssayMapping |
StandardQuantitationType |
|
ReporterGroup |
Treatment |
BioAssayMap |
SpecializedQuantitationType |
|
DesignElementGroup |
BioMaterialMeasurement |
PresentAbsent |
|
|
FeatureGroup |
CompoundMeasurement |
Experiment |
MeasuredSignal |
|
PhysicalArrayDesign |
Compound |
Experiment |
DerivedSignal |
|
ZoneGroup |
ExperimentDesign |
Ratio |
|
|
ZoneLayout |
ExperimentFactor |
ConfidenceIndicator |
|
|
Zone |
FactorValue |
Pvalue |
|
|
Error |
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|
ExpectedValue |
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|
|
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|
Bold indicates packages and italics indicates abstract classes. |
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|
Spellman et al. Genome Biology 2002 3:research0046.1 doi:10.1186/gb-2002-3-9-research0046 |
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