Towards reconstruction of gene networks from expression data by supervised learning
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* Corresponding author: Lev A Soinov lev@ebi.ac.uk
Genome Biology 2003, 4:R6 doi:10.1186/gb-2003-4-1-r6
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Software
Priit Adler, Raivo Kolde, Meelis Kull, Aleksandr Tkachenko, Hedi Peterson, Jüri Reimand, Jaak Vilo Genome Biology 2009, 10:R139 (4 December 2009) The MEM web resource allows users to search for co-expressed genes across all microarray datasets in the ArrayExpress database. |
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Proceedings
MINER: exploratory analysis of gene interaction networks by machine learning from expression data Sidath Kadupitige, Kin Leung, Julia Sellmeier, Jane Sivieng, Daniel R Catchpoole, Michael E Bain, Bruno A Gaëta BMC Genomics 2009, 10(Suppl 3):S17 (3 December 2009) |
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Research
Jianhua Ruan, Youping Deng, Edward J Perkins, Weixiong Zhang BMC Genomics 2009, 10(Suppl 1):S8 (7 July 2009) |
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Research article
Information processing in the transcriptional regulatory network of yeast: Functional robustness Frank Emmert-Streib, Matthias Dehmer BMC Systems Biology 2009, 3:35 (19 March 2009) |
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Proceedings
Arun Rawat, Georg J Seifert, Youping Deng BMC Bioinformatics 2008, 9(Suppl 9):S7 (12 August 2008) |
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Review
Current approaches to gene regulatory network modelling Thomas Schlitt, Alvis Brazma BMC Bioinformatics 2007, 8(Suppl 6):S9 (27 September 2007) |
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Review
Inferring cellular networks – a review Florian Markowetz, Rainer Spang BMC Bioinformatics 2007, 8(Suppl 6):S5 (27 September 2007) |
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Methodology article
Accelerated search for biomolecular network models to interpret high-throughput experimental data Suman Datta, Bahrad A Sokhansanj BMC Bioinformatics 2007, 8:258 (18 July 2007) |
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Methodology article
Discovery of time-delayed gene regulatory networks based on temporal gene expression profiling Xia Li, Shaoqi Rao, Wei Jiang, Chuanxing Li, Yun Xiao, Zheng Guo, Qingpu Zhang, Lihong Wang, Lei Du, Jing Li, Li Li, Tianwen Zhang, Qing K Wang BMC Bioinformatics 2006, 7:26 (18 January 2006) |
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Methodology article
Linear fuzzy gene network models obtained from microarray data by exhaustive search Bahrad A Sokhansanj, J Patrick Fitch, Judy N Quong, Andrew A Quong BMC Bioinformatics 2004, 5:108 (10 August 2004) |