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MAPPFinder: using Gene Ontology and GenMAPP to create a global gene-expression profile from microarray data

Scott W Doniger1, Nathan Salomonis1, Kam D Dahlquist1,2, Karen Vranizan1,4, Steven C Lawlor1 and Bruce R Conklin1,2,3*

1 Gladstone Institute of Cardiovascular Disease, University of California, San Francisco, CA 94141-9100, USA

2 Cardiovascular Research Institute, University of California, San Francisco, CA 94143, USA

3 Departments of Medicine and Cellular and Molecular Pharmacology, University of California, San Francisco, CA 94143, USA

4 Functional Genomics Lab, University of California, Berkeley, CA 94720, USA

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Genome Biology 2003, 4:R7 doi:10.1186/gb-2003-4-1-r7

Published: 6 January 2003

Additional files

Additional data file 1:

The FVBN developmental data in the form of a GenMAPP expression dataset file (.gex). It contains the microarray dataset and the criteria used to define increased and decreased gene-expression change. It can be opened for editing in GenMAPP and is the appropriate data type for use with MAPPFinder.

Format: GEX Size: 3.2MB Download file

Open Data

Additional data file 2:

The FVBN developmental data as a database file generated by MAPPFinder (.gdb). It contains the relationships between the genes in the dataset and the GO hierarchy. The file can be opened for viewing in Microsoft Access. This file must be present to build GenMAPP MAPPs from existing MAPPFinder results.

Format: GDB Size: 4.1MB Download file

Open Data

Additional data file 3:

12.5-day Embryo - significantly increased - Gene Ontology results

Format: TXT Size: 96KB Download file

Open Data

Additional data file 4:

12.5-day Embryo - significantly increased - Local results

Format: TXT Size: 2KB Download file

Open Data

Additional data file 5:

12.5-day Embryo - significantly decreased - Gene Ontology results

Format: TXT Size: 93KB Download file

Open Data

Additional data file 6:

12.5-day Embryo - significantly decreased - Local results

Format: TXT Size: 3KB Download file

Open Data

Additional data file 7:

12.5-day Embryo - All Changes - Gene Ontology results

Format: TXT Size: 128KB Download file

Open Data

Additional data file 8:

12.5-day Embryo - All Changes - Local results

Format: TXT Size: 3KB Download file

Open Data

Additional data file 9:

A zip file containing all aditional data files.

Format: ZIP Size: 2.6MB Download file

Open Data