MAPPFinder: using Gene Ontology and GenMAPP to create a global gene-expression profile from microarray data

doi:10.1186/gb-2003-4-1-r7

Genome Biology

Volume 4
Issue 1

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Doniger SW
Salomonis N
Dahlquist KD
Vranizan K
Lawlor SC
Conklin BR

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Dahlquist KD
Vranizan K
Lawlor SC
Conklin BR
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MAPPFinder: using Gene Ontology and GenMAPP to create a global gene-expression profile from microarray data

Scott W Doniger¹, Nathan Salomonis¹, Kam D Dahlquist¹^,2, Karen Vranizan¹^,4, Steven C Lawlor¹ and Bruce R Conklin¹^,2^,3

¹Gladstone Institute of Cardiovascular Disease, University of California, San Francisco, CA 94141-9100, USA

²Cardiovascular Research Institute, University of California, San Francisco, CA 94143, USA

³Departments of Medicine and Cellular and Molecular Pharmacology, University of California, San Francisco, CA 94143, USA

⁴Functional Genomics Lab, University of California, Berkeley, CA 94720, USA

author email corresponding author email

Genome Biology 2003, 4:R7doi:10.1186/gb-2003-4-1-r7


Published:	6 January 2003

Subject areas: Bioinformatics, Methods, Genome studies

Additional files

Additional data file 1:

The FVBN developmental data in the form of a GenMAPP expression dataset file (.gex). It contains the microarray dataset and the criteria used to define increased and decreased gene-expression change. It can be opened for editing in GenMAPP and is the appropriate data type for use with MAPPFinder.

Format: GEX Size: 3.2MB Download file

Additional data file 2:

The FVBN developmental data as a database file generated by MAPPFinder (.gdb). It contains the relationships between the genes in the dataset and the GO hierarchy. The file can be opened for viewing in Microsoft Access. This file must be present to build GenMAPP MAPPs from existing MAPPFinder results.

Format: GDB Size: 4.1MB Download file

Additional data file 3:

12.5-day Embryo - significantly increased - Gene Ontology results

Format: TXT Size: 96KB Download file

Additional data file 4:

12.5-day Embryo - significantly increased - Local results

Format: TXT Size: 2KB Download file

Additional data file 5:

12.5-day Embryo - significantly decreased - Gene Ontology results

Format: TXT Size: 93KB Download file

Additional data file 6:

12.5-day Embryo - significantly decreased - Local results

Format: TXT Size: 3KB Download file

Additional data file 7:

12.5-day Embryo - All Changes - Gene Ontology results

Format: TXT Size: 128KB Download file

Additional data file 8:

12.5-day Embryo - All Changes - Local results

Format: TXT Size: 3KB Download file

Additional data file 9:

A zip file containing all aditional data files.

Format: ZIP Size: 2.6MB Download file