Table 1

MAPPFinder analysis
Upregulated process
C
 M
 T
 Z
 Downregulated process
 C
 M
 T
 Z
6 hours after RE
 Circadian rhythm
 4
 10
 13
 7.2
 Oxygen transport
 3
 8
 17
 4.5

Nucleic acid metabolism
 59
 1570
 2905
 2.7
 Calcium ion transport
 8
 44
 67
 4.4

Hearing
 3
 32
 54
 2.3
 DNA repair
 16
 134
 195
 4.2

G2/M transition of mitotic cell cycle
 3
 34
 40
 2.2
 Regulation of translational initiation
 5
 26
 30
 3.6

Anti-apoptosis
 4
 53
 71
 2.1
 Di-, trivalent inorganic cation transport
 8
 66
 102
 3.0

Transcription
 38
 1025
 1992
 2.0
 Glycogen metabolism
 4
 24
 25
 2.9











18 hours after RE
 Protein amino acid phosphorylation
 60
 383
 735
 4.7
 Peripheral nervous system development
 5
 11
 12
 5.5

Regulation of cell cycle
 42
 248
 294
 4.5
 Glycosphingolipid biosynthesis
 3
 5
 5
 5.0

Anti-apoptosis
 12
 53
 71
 3.5
 Antigen processing, endogenous antigen via MHC class I
 3
 6
 11
 4.5

Mitochondrion organization and biogenesis
 5
 15
 23
 3.3
 Iron transport
 4
 10
 21
 4.5

Protein-mitochondrial targeting
 4
 11
 19
 3.2
 Glutamine family amino acid catabolism
 4
 13
 19
 3.7

L-Amino-acid transport
 3
 7
 9
 3.1
 Male gonad development
 3
 9
 12
 3.4











Diurnal
 Regulation of transcription, DNA-dependent
 46
 938
 1852
 3.7
 Regulation of protein biosynthesis
 3
 7
 12
 5.7

Cell differentiation
 7
 68
 109
 3.6
 Non-selective vesicle transport
 7
 57
 63
 3.7

Response to stress
 24
 452
 566
 3.0
 Actin cytoskeleton organization and biogenesis
 3
 15
 23
 3.5

Hemopoiesis
 3
 22
 28
 2.9
 Cell-cycle arrest
 5
 37
 53
 3.4

Oncogenesis
 14
 253
 282
 2.4
 Main pathways of carbohydrate metabolism
 7
 69
 100
 3.1

Nucleic acid metabolism
 61
 1570
 2905
 2.3
 Tricarboxylic acid cycle
 3
 20
 23
 2.8

Filtered genes (p < 0.05) were analyzed with MAPPFinder to determine the biological processes that were regulated in each comparison. C, number of genes changed; M, number of genes represented on chip in a process; T, number of genes in the Gene Ontology (GO) process: Z, significance Z-score value. The top six, non-redundant GO terms are shown for each comparison

Zambon et al. Genome Biology 2003 4:R61   doi:10.1186/gb-2003-4-10-r61

Open Data