Genome Biology

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Open Access

POCUS: mining genomic sequence annotation to predict disease genes

Frances S Turner, Daniel R Clutterbuck and Colin AM Semple*

Genome Biology 2003, 4:R75 doi:10.1186/gb-2003-4-11-r75

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BioMed Central: 18 citations

Methodology article   Open Access Highly Accessed

Analysis of genome-wide association study data using the protein knowledge base

Sara Ballouz, Jason Y Liu, Martin Oti, Bruno Gaeta, Diane Fatkin, Melanie Bahlo, Merridee A Wouters BMC Genetics 2011, 12:98 (13 November 2011)

Research article   Open Access Highly Accessed

ProDiGe: Prioritization Of Disease Genes with multitask machine learning from positive and unlabeled examples

Fantine Mordelet, Jean-Philippe Vert BMC Bioinformatics 2011, 12:389 (6 October 2011)

Research   Open Access

DADA: Degree-Aware Algorithms for Network-Based Disease Gene Prioritization

Sinan Erten, Gurkan Bebek, Rob M Ewing, Mehmet Koyutürk BioData Mining 2011, 4:19 (24 June 2011)

Research   Open Access

Integrating multiple protein-protein interaction networks to prioritize disease genes: a Bayesian regression approach

Wangshu Zhang, Fengzhu Sun, Rui Jiang BMC Bioinformatics 2011, 12(Suppl 1):S11 (15 February 2011)

Proceedings   Open Access

A machine learning approach for genome-wide prediction of morbid and druggable human genes based on systems-level data

Pedro R Costa, Marcio L Acencio, Ney Lemke BMC Genomics 2010, 11(Suppl 5):S9 (22 December 2010)

Research   Open Access

Integration of multiple data sources to prioritize candidate genes using discounted rating system

Yongjin Li, Jagdish C Patra BMC Bioinformatics 2010, 11(Suppl 1):S20 (18 January 2010)

Method   Open Access Highly Accessed

Genome-wide prioritization of disease genes and identification of disease-disease associations from an integrated human functional linkage network

Bolan Linghu, Evan S Snitkin, Zhenjun Hu, Yu Xia, Charles DeLisi Genome Biology 2009, 10:R91 (3 September 2009)

An evidence-weighted functional-linkage network of human genes reveals associations among diseases that share no known disease genes and have dissimilar phenotypes

Review   Free Highly Accessed

Linking genes to diseases: it's all in the data

Nicki Tiffin, Miguel A Andrade-Navarro, Carolina Perez-Iratxeta Genome Med 2009, 1:77 (7 August 2009)

Computational approaches to disease-gene associations, especially those that use phenotype ontologies, can help to prioritize the most likely candidate genes.

Research article   Open Access Highly Accessed

In silico prioritisation of candidate genes for prokaryotic gene function discovery: an application of phylogenetic profiles

Frank PY Lin, Enrico Coiera, Ruiting Lan, Vitali Sintchenko BMC Bioinformatics 2009, 10:86 (17 March 2009)

Research article   Open Access Highly Accessed

Disease candidate gene identification and prioritization using protein interaction networks

Jing Chen, Bruce J Aronow, Anil G Jegga BMC Bioinformatics 2009, 10:73 (27 February 2009)

Proceedings   Open Access

Identifying hypothetical genetic influences on complex disease phenotypes

Benjamin J Keller, Richard C McEachin BMC Bioinformatics 2009, 10(Suppl 2):S13 (5 February 2009)

Research   Open Access

Comparison of automated candidate gene prediction systems using genes implicated in type 2 diabetes by genome-wide association studies

Erdahl T Teber, Jason Y Liu, Sara Ballouz, Diane Fatkin, Merridee A Wouters BMC Bioinformatics 2009, 10(Suppl 1):S69 (30 January 2009)

Research article   Open Access

Prioritizing genes of potential relevance to diseases affected by sex hormones: an example of Myasthenia Gravis

Mandeep Kaur, Sebastian Schmeier, Cameron R MacPherson, Oliver Hofmann, Winston A Hide, Stephen Taylor, Nick Willcox, Vladimir B Bajic BMC Genomics 2008, 9:481 (13 October 2008)

Methodology article   Open Access

Computational selection and prioritization of candidate genes for Fetal Alcohol Syndrome

Zané Lombard, Nicki Tiffin, Oliver Hofmann, Vladimir B Bajic, Winston Hide, Michèle Ramsay BMC Genomics 2007, 8:389 (25 October 2007)

Research article   Open Access

Improved human disease candidate gene prioritization using mouse phenotype

Jing Chen, Huan Xu, Bruce J Aronow, Anil G Jegga BMC Bioinformatics 2007, 8:392 (16 October 2007)

Oral presentation   Open Access

Prioritisation of Disease Gene Candidates: A Systems Biology Approach

Frances S Turner BMC Bioinformatics 2005, 6(Suppl 3):S14 (21 September 2005)

Software   Open Access Highly Accessed

G2D: a tool for mining genes associated with disease

Carolina Perez-Iratxeta, Matthias Wjst, Peer Bork, Miguel A Andrade BMC Genetics 2005, 6:45 (22 August 2005)

Research article   Open Access

A web tool for finding gene candidates associated with experimentally induced arthritis in the rat

Lars Andersson, Greta Petersen, Per Johnson, Fredrik Ståhl Arthritis Research & Therapy 2005, 7:R485-R492 (18 February 2005)