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Genes in Cycas rumphii with potential roles in signaling, development and biosynthesis of BMAA |
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| GenBank accession number |
Subject description |
E-value |
% ID |
Score |
|
|
|
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| Development |
CB092871 |
Argonaute-like protein 1 (AGO1) Arabidopsis thaliana |
8.00e-10 |
0.85 |
34 |
| CB090033 |
YABBY2 A. thaliana |
2.00e-36 |
0.58 |
151 |
|
| CB089539 |
Multisubunit regulator protein COP9 - spinach COP9 Spinacia oleracea |
2.00e-31 |
0.62 |
98 |
|
| CB092157 |
CONSTANS B-box zinc finger family protein A. thaliana |
1.00e-47 |
0.48 |
221 |
|
| CB092462 |
CRHB3 homeoprotein Ceratopteris richardii |
3.00e-44 |
0.70 |
131 |
|
| CB089344 |
Homeodomain protein HB2 Picea abies |
3.00e-29 |
0.62 |
117 |
|
| Signaling |
CB089945 |
Photolyase/blue-light receptor PHR2 |
8.00e-76 |
0.69 |
197 |
| CB091652 |
Putative glutamate receptor protein GLR3.4b |
2.00e-45 |
0.54 |
161 |
|
| CB093220 |
Calmodulin-like protein; protein ids At5g44460.1 A. thaliana |
3.00e-07 |
0.58 |
45 |
|
| CB089469 |
14-3-3 protein Fritillaria cirrhosa |
8.00e-38 |
0.80 |
94 |
|
| CB091066 |
Ser/Thr protein kinase isolog; protein ids, supported by cDNAs Arabidopsis |
1.00e-10 |
0.28 |
185 |
|
| CB090652 |
Ser/Thr specific protein phosphatase 2A B regulatory subunit beta Medicago |
4.00e-86 |
0.94 |
162 |
|
| CB093099 |
Auxin regulated protein (IAA13) A. thaliana |
1.00e-34 |
0.63 |
125 |
|
| CB089385 |
Auxin-induced protein IAA9 A. thaliana |
8.00e-29 |
0.55 |
111 |
|
| Biosynthetic enzymes of cycad specific phytochemicals (BMAA) |
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| Cysteine synthase |
CB089577 |
Cysteine synthase (O-acetylserine sulfhydrylase) |
3.00e-50 |
0.75 |
128 |
| CB092214 |
Plastid cysteine synthase 2 Solanum tuberosum |
5.00e-27 |
0.64 |
83 |
|
| Methyl transferases |
CB091906 |
Caffeic acid O-methyltransferase II Nicotiana tabacum |
3.00e-35 |
0.56 |
122 |
| CB090738 |
Caffeoyl-CoA 3-O-methyltransferase Oryza sativa |
1.00e-37 |
0.47 |
188 |
|
| SAdM metabolism |
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| Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) |
CB091477 |
Adenosylhomocysteinase Phalaenopsis |
1.00e-87 |
0.84 |
185 |
| CB091821 |
Adenosylhomocysteinase Triticum aestivum |
3.00e-78 |
0.90 |
156 |
|
| CB090818 |
Adenosylhomocysteinase Medicago sativa |
2.00e-18 |
0.68 |
66 |
|
| S-adenosylmethionine synthase |
CB091682 |
S-adenosylmethionine synthetase Brassica juncea |
4.00e-90 |
0.94 |
167 |
| CB090997 |
S-adenosylmethionine synthetase (methionine adenosyltransferase) Petunia |
1.00e-69 |
0.94 |
133 |
|
| CB090407 |
S-adenosyl-L-methionine synthetase Elaeagnus umbellata |
1.00e-93 |
0.88 |
191 |
|
| Homocysteine methyltransferase |
CB092344 |
Methionine synthase protein Sorghum bicolor |
4.00e-94 |
0.90 |
190 |
| CB091647 |
5-methyltetrahydropteroyltriglutamate - homocysteine S-methyltransferase |
3.00e-79 |
0.76 |
205 |
|
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C. rumphii ESTs were compared to GenBank with a BLASTP score < e-5. The top match produced from the BLAST search to the cycad EST is listed under subject description. | |||||
Brenner et al. Genome Biology 2003 4:R78 doi:10.1186/gb-2003-4-12-r78 |
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