Method
Comparing cDNA and oligonucleotide array data: concordance of gene expression across platforms for the NCI-60 cancer cells
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* Corresponding authors: Jae K Lee jaeklee@virginia.edu - John N Weinstein weinstein@dtpax2.ncifcrf.gov
1 Laboratory of Molecular Pharmacology, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892-8322, USA
2 Laboratory of Cell Biology, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892-8322, USA
3 Current address: Department of Health Evaluation Sciences, University of Virginia School of Medicine, Charlottesville, VA 22908, USA
Genome Biology 2003, 4:R82 doi:10.1186/gb-2003-4-12-r82
Published: 25 November 2003Additional files
Additional data file 1:
A figure that shows scatter plots of cell-cell Pearson correlation coefficients relating the cDNA array and oligo array data sets
Format: DOC Size: 34KB Download file
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Additional data file 2:
Scatter plots of cell standard deviations across the set of 2,344 genes for the cDNA array and oligo array data sets
Format: DOC Size: 29KB Download file
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Additional data file 3:
An Excel sheet for the original Affymetrix oligo array data on 6,810 human and 319 control transcripts
Format: XLS Size: 3MB Download file
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Additional data file 4:
An Excel sheet for the ratio data on 9,706 cDNA-clone database
Format: XLS Size: 6MB Download file
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Additional data file 5:
An Excel file that gives a summary for the UniGene-matched pairs
Format: XLS Size: 811KB Download file
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Additional data file 6:
An Excel file for the consensus data set based on both cDNA- and oligo-arrays
Format: XLS Size: 2.7MB Download file
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Additional data file 7:
Descriptive information on the oligo-array transcripts listed in Additional data file 8
Format: XLS Size: 497KB Download file
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Additional data file 8:
An excel file contains the Oligo database
Format: XLS Size: 2.7MB Download file
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Additional data file 9:
A table showing mapping coordinates for human PPs
Format: XLS Size: 488KB Download file
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Additional data file 10:
Descriptive information on the cDNA-array transcripts listed in Additional data file 10
Format: XLS Size: 3.3MB Download file
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Additional data file 11:
The real-time RT-PCR results for five transcripts of the ABC transporter family
Format: DOC Size: 27KB Download file
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