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Summary of the numbers of clones, genes and UniGene clusters falling into various categories at different stages in the mutual-validation procedure |
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| Category |
Oligo chip |
cDNA array |
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|
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| Total number of oligo sequences or cDNA clones |
6,810 |
9,706 |
| Number of unique UniGene clusters (number of sequences) |
5,280 (5,720 sequences) |
8,426 (9,271 clones) |
| Number of UniGene clusters including more than one transcript from each array type |
494 (9.4%, max 4) |
1,259 (14.9%, max 9) |
| Number of sequences belonging to more than one UniGene cluster |
47 sequences(0.9%, max 11) |
761 clones (8.2%, max 2) |
| Numbers of UniGene clusters (number of sequences) represented on both array types |
3,153 (3,520 sequences) |
3,153 (3,993 clones) |
| Numbers of UniGene clusters (number of sequences) represented on both array types after removing oligo genes with > 45 thresholded values |
2,344 (2,492 sequences) |
2,344 (3,002 clones) |
| Number among the common 2,344 UniGene clusters that include more than one sequence/array |
133 (5.7%, max 4) |
475 (20.3%, max 9) |
| Number of final UniGene clusters after correlation filtering (number of sequences) |
1,493 (1,564 sequences) |
1,493 (1,733 clones) |
Lee et al. Genome Biology 2003 4:R82 doi:10.1186/gb-2003-4-12-r82 |
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