Table 8 |
|||
|
Pattern matrix for synthetic data |
|||
|
Class 1 |
Class 2 |
Class 3 |
Class 4 |
|
|
|||
|
1 |
0 |
0 |
0 |
|
-1 |
0 |
0 |
0 |
|
0 |
1 |
0 |
0 |
|
0 |
-1 |
0 |
0 |
|
0 |
0 |
1 |
0 |
|
0 |
0 |
-1 |
0 |
|
0 |
0 |
0 |
1 |
|
0 |
0 |
0 |
-1 |
|
1 |
1 |
0 |
0 |
|
-1 |
-1 |
0 |
0 |
|
1 |
-1 |
0 |
0 |
|
-1 |
1 |
0 |
0 |
|
1 |
0 |
1 |
0 |
|
-1 |
0 |
-1 |
0 |
|
1 |
0 |
-1 |
0 |
|
-1 |
0 |
1 |
0 |
|
1 |
0 |
0 |
1 |
|
-1 |
0 |
0 |
-1 |
|
1 |
0 |
0 |
-1 |
|
-1 |
0 |
0 |
1 |
|
0 |
1 |
1 |
0 |
|
0 |
-1 |
-1 |
0 |
|
0 |
1 |
-1 |
0 |
|
0 |
-1 |
1 |
0 |
|
0 |
1 |
0 |
1 |
|
|
|||
|
Each row represents a pattern, and each column represents a class such that entry P(i, j) is the ith pattern of class j. An entry of 1 means upregulated while an entry of -1 means downregulated. For example, the first row indicates that a patterned gene is upregulated in class 1 compared to all the other three classes. |
|||
|
Yeung and Bumgarner Genome Biology 2003 4:R83 doi:10.1186/gb-2003-4-12-r83 |
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