Genome Biology

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Evolutionary history, structural features and biochemical diversity of the NlpC/P60 superfamily of enzymes

Vivek Anantharaman and L Aravind*

Genome Biology 2003, 4:R11 doi:10.1186/gb-2003-4-2-r11

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Research article   Open Access

Induction of apoptosis by the retinoid inducible growth regulator RIG1 depends on the NC motif in HtTA cervical cancer cells

Fu-Ming Tsai, Rong-Yaun Shyu, Su-Ching Lin, Chang-Chieh Wu, Shun-Yuan Jiang BMC Cell Biology 2009, 10:15 (26 February 2009)

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Identification of multiple independent horizontal gene transfers into poxviruses using a comparative genomics approach

Kirsten A Bratke, Aoife McLysaght BMC Evolutionary Biology 2008, 8:67 (27 February 2008)

Research   Open Access

The prokaryotic antecedents of the ubiquitin-signaling system and the early evolution of ubiquitin-like β-grasp domains

Lakshminarayan M Iyer, A Maxwell Burroughs, L Aravind Genome Biology 2006, 7:R60 (19 July 2006)

A systematic analysis of prokaryotic ubiquitin-related beta-grasp fold proteins provides new insights into the Ubiquitin family functional history.

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Coiled-coil protein composition of 22 proteomes – differences and common themes in subcellular infrastructure and traffic control

Annkatrin Rose, Shannon J Schraegle, Eric A Stahlberg, Iris Meier BMC Evolutionary Biology 2005, 5:66 (16 November 2005)

A computational approach that identifies proteins with long alpha-helical coiled-coil domains across 22 fully sequenced genomes shows that extended coiled-coil proteins are largely absent from bacterial genomes but that archaea and eukaryotes share some functional types.

Research article   Open Access

The PECACE domain: a new family of enzymes with potential peptidoglycan cleavage activity in Gram-positive bacteria

Estelle Pagliero, Otto Dideberg, Thierry Vernet, Anne Di Guilmi BMC Genomics 2005, 6:19 (17 February 2005)