Expression profiling of the schizont and trophozoite stages of Plasmodium falciparum with a long-oligonucleotide microarray
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* Corresponding author: Joseph L DeRisi joe@derisilab.ucsf.edu
Genome Biology 2003, 4:R9 doi:10.1186/gb-2003-4-2-r9
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BioMed Central: 29 citations
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Anatoly Urisman, Kael F Fischer, Charles Y Chiu, Amy L Kistler, Shoshannah Beck, David Wang, Joseph L DeRisi Genome Biology 2005, 6:R78 (30 August 2005) An algorithm, E-Predict, for microarray-based species identification is presented. E-Predict compares an observed hybridization pattern with a set of theoretical energy profiles. Each profile represents a species that may be identified. |
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Transcript copy number estimation using a mouse whole-genome oligonucleotide microarray Mark G Carter, Alexei A Sharov, Vincent VanBuren, Dawood B Dudekula, Condie E Carmack, Charlie Nelson, Minoru SH Ko Genome Biology 2005, 6:R61 (30 June 2005) An |
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Yvan Charbonnier, Brian Gettler, Patrice François, Manuela Bento, Adriana Renzoni, Pierre Vaudaux, Werner Schlegel, Jacques Schrenzel BMC Genomics 2005, 6:95 (17 June 2005) |
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Zbynek Bozdech, Hagai Ginsburg Malaria Journal 2005, 4:17 (18 March 2005) In order to be useful, the huge amount of transcriptomic data now available for malarial parasites needs to be linked to already available biochemical and functional data. This was done here for the pentose phosphate pathway of carbohydrate metabolism.
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Secondary structure in the target as a confounding factor in synthetic oligomer microarray design Vladyslava G Ratushna, Jennifer W Weller, Cynthia J Gibas BMC Genomics 2005, 6:31 (8 March 2005) |
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Methodology
In vivo transcriptional profiling of Plasmodium falciparum Johanna P Daily, Karine G Le Roch, Ousmane Sarr, Xuemin Fang, Yingyao Zhou, Omar Ndir, Soulyemane Mboup, Ali Sultan, Elizabeth A Winzeler, Dyann F Wirth Malaria Journal 2004, 3:30 (5 August 2004) This methodology paper reports the first attempt to use samples of parasites taken directly from the patient to explore the malarial transcriptome.
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Research
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Research
Raphael D Isokpehi, Winston A Hide Malaria Journal 2003, 2:38 (14 November 2003) A useful attempt to integrate information from genomic sequencing, micro-array data and published proteomic data mostly from Plasmodium falciparum.
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