Table 2 |
||
|
Summary of all libraries used for statistical analysis and correlation coefficients for comparisons made between SAGE libraries |
||
| Library name |
Source |
Tag number |
|
|
||
| ONL1 |
Adult mouse retina outer nuclear layer |
26,016 |
| ONL2 |
Same starting library as ONL1, but represents the second 26,000 tags sequenced in
that library |
25,956 |
| P2.5A |
P2.5 C57B/6 whole-mouse retina |
23,525 |
| P2.5B |
Same ditag ligation as P2.5A was used to make the library, but ditag ligation stored
at -20°C for 3 months before generation of library |
23,566 |
| Crx+/+A |
P10.5 whole retina from Crx+/+ mice (hybrid of C57B/6 and Sv129) |
17,441 |
| Crx+/+B |
Same mRNA sample as in Crx+/+A was used to make the library |
17,422 |
| 41-year-old peripheral retina |
41-year-old Japanese male |
23,662 |
| 44-year-old peripheral retina |
44-year-old American caucasian male |
23,758 |
| 88-year-old peripheral retina |
88-year-old American caucasian female |
23,773 |
| P6.5A |
P6.5 whole retina from three different C57B/6 littermate mice. Tissue stored at -80°C
for 1 week before library preparation |
25,466 |
| P6.5B |
P6.5 whole retina from three different C57B/6 littermate mice, from same litter as
for P6.5A. Tissue stored at -80°C for 6 months before library preparation |
25,473 |
| Hypothalamus A |
8-week-old male C57B/6 mouse hypothalamus from three different individuals. Animals
housed at facilities in Boston, MA |
48,978 |
| Hypothalamus B |
8-week-old male C57B/6 mouse hypothalamus from 20 different individuals. Animals housed
at facilities in Melbourne, Australia |
48,953 |
| Adult whole retina A |
8-week-old male total C57B/6 mouse retina |
48,964 |
| Adult whole retina B |
8-week-old male total C57B/6 mouse retina (same library as adult total retina A) |
28,593 |
| 3T3 cells |
Mouse 3T3 fibroblast cell line |
28,531 |
|
|
||
|
Blackshaw et al. Genome Biology 2003 4:R17 doi:10.1186/gb-2003-4-3-r17 |
||
