Genome-wide detection of segmental duplications and potential assembly errors in the human genome sequence
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* Corresponding authors: Xavier Estivill xavier.estivill@crg.es - Stephen W Scherer steve@genet.sickkids.on.ca
Genome Biology 2003, 4:R25 doi:10.1186/gb-2003-4-4-r25
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BioMed Central: 13 citations
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Method
Detection and correction of false segmental duplications caused by genome mis-assembly David R Kelley, Steven L Salzberg Genome Biology 2010, 11:R28 (10 March 2010) A method for determining false segmental duplications in vertebrate genomes, thus correcting mis-assemblies and providing more accurate estimates of duplications. |
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Research article
DDX11L: a novel transcript family emerging from human subtelomeric regions Valerio Costa, Amelia Casamassimi, Roberta Roberto, Fernando Gianfrancesco, Maria R Matarazzo, Michele D'Urso, Maurizio D'Esposito, Mariano Rocchi, Alfredo Ciccodicola BMC Genomics 2009, 10:250 (28 May 2009) |
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Research article
Large-scale inference of the point mutational spectrum in human segmental duplications Sigve Nakken, Einar A Rødland, Torbjørn Rognes, Eivind Hovig BMC Genomics 2009, 10:43 (22 January 2009) |
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Research article
Evolutionary analysis of the highly dynamic CHEK2 duplicon in anthropoids Claudia Münch, Stefan Kirsch, António MG Fernandes, Werner Schempp BMC Evolutionary Biology 2008, 8:269 (2 October 2008) |
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Research article
Tomàs Marques-Bonet, Ze Cheng, Xinwei She, Evan E Eichler, Arcadi Navarro BMC Genomics 2008, 9:384 (12 August 2008) |
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Software
Genome assembly forensics: finding the elusive mis-assembly Adam M Phillippy, Michael C Schatz, Mihai Pop Genome Biology 2008, 9:R55 (14 March 2008) A collection of software tools is combined for the first time in an automated pipeline for detecting large-scale genome assembly errors and for validating genome assemblies. |
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Research article
Database of Trypanosoma cruzi repeated genes: 20 000 additional gene variants Erik Arner, Ellen Kindlund, Daniel Nilsson, Fatima Farzana, Marcela Ferella, Martti T Tammi, Björn Andersson BMC Genomics 2007, 8:391 (26 October 2007) |
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Research article
Evolutionary implications of inversions that have caused intra-strand parity in DNA Kohji Okamura, John Wei, Stephen W Scherer BMC Genomics 2007, 8:160 (11 June 2007) |
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Research article
Transcriptome coexpression map of human embryonic stem cells Huai Li, Ying Liu, Soojung Shin, Yu Sun, Jeanne F Loring, Mark P Mattson, Mahendra S Rao, Ming Zhan1 BMC Genomics 2006, 7:103 (2 May 2006) Expression profiling of human embryonic stem cells (ES) and embryoid bodies (EB), the earliest stage of ES differentiation, identifies specific chromosomal domains with coexpressing neighboring genes that differ between ES and EB in coexpression pattern.
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Research article
Duplication and relocation of the functional DPY19L2 gene within low copy repeats Andrew R Carson, Joseph Cheung, Stephen W Scherer BMC Genomics 2006, 7:45 (9 March 2006) |
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Research article
Michael E Bradley, Steven A Benner BMC Evolutionary Biology 2005, 5:22 (7 March 2005) |
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Research article
Stefan Taudien, Petra Galgoczy, Klaus Huse, Kathrin Reichwald, Markus Schilhabel, Karol Szafranski, Atsushi Shimizu, Shuichi Asakawa, Adam Frankish, Ivan F Loncarevic, Nobuyoshi Shimizu, Roman Siddiqui, Matthias Platzer BMC Genomics 2004, 5:92 (10 December 2004) |
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Research
Recent segmental and gene duplications in the mouse genome Joseph Cheung, Michael D Wilson, Junjun Zhang, Razi Khaja, Jeffrey R MacDonald, Henry HQ Heng, Ben F Koop, Stephen W Scherer Genome Biology 2003, 4:R47 (9 July 2003) BLAST-based computational heuristics were used to identify large and recent segmental duplications in the mouse genome sequence. Here a database of recently duplicated regions of the mouse genome is presented. |