Table 3

Comparison of duplications and potential sequence misassignment errors in genome assemblies

December 2001
 April 2002
 June 2002


Length
 Duplications
 Errors
 Length
 Duplications
 Errors
 Length
 Duplications
 Errors
Chr1
 2,564
 99
 115
 2,459
 68
 60
 2,469
 71
 44
Chr2
 2,413
 70
 45
 2,468
 79
 57
 2,407
 69
 23
Chr3
 2,048
 49
 90
 2,047
 29
 73
 1,949
 31
 40
Chr4
 1,914
 39
 44
 1,970
 51
 49
 1,920
 41
 25
Chr5
 1,848
 55
 90
 1896
 55
 112
 1,810
 45
 23
Chr6
 1,783
 58
 56
 1,828
 43
 153
 1,703
 29
 6
Chr7
 1,638
 130
 48
 1,605
 119
 27
 1,574
 101
 2
Chr8
 1,457
 35
 66
 1,484
 33
 43
 1,439
 26
 40
Chr9
 1,330
 83
 38
 1,291
 75
 27
 1,324
 83
 16
Chr10
 1,421
 74
 51
 1,385
 72
 39
 1,344
 63
 13
Chr11
 1,414
 51
 84
 1,341
 43
 36
 1,374
 44
 20
Chr12
 1,396
 30
 83
 1,342
 24
 32
 1,313
 28
 34
Chr13
 1,151
 29
 21
 1,136
 22
 15
 1,134
 19
 1
Chr14
 1,065
 27
 8
 1,054
 23
 10
 1,043
 13
 0
Chr15
 991
 62
 30
 1,000
 54
 20
 992
 56
 17
Chr16
 938
 65
 44
 932
 67
 32
 817
 60
 21
Chr17
 839
 66
 46
 811
 46
 29
 801
 53
 21
Chr18
 818
 16
 59
 809
 12
 32
 775
 12
 14
Chr19
 769
 45
 28
 730
 34
 12
 600
 32
 3
Chr20
 630
 10
 5
 628
 12
 4
 628
 11
 1
Chr21
 446
 18
 3
 446
 16
 2
 446
 15
 0
Chr22
 478
 28
 0
 477
 29
 1
 477
 28
 0
ChrX
 1,517
 54
 40
 1,518
 61
 23
 1,492
 55
 22
ChrY
 584
 86
 2
 584
 95
 2
 584
 85
 1
ChrUn
 74
 10
 1
 125
 11
 43
 14
 4
 1
Total
 31,526
 1,290
 1,097
 31,366
 1,175
 932
 30,431
 1,074
 389






























% range*
Duplication
 Error
Duplication
 Error
Duplication
 Error
90-92%
135
 0
137
 0
117
 0
92-94%
334
 0
334
 0
311
 0
94-96%
391
 0
382
 0
367
 0
96-98%
451
 0
444
 0
418
 0
98-100%
884
 1,097
724
 932
665
 389

*All numbers shown in the table are × 100 kb. *Sequence similarity between duplication by five levels of percent identity.

Cheung et al. Genome Biology 2003 4:R25   doi:10.1186/gb-2003-4-4-r25

Open Data