Analysis and functional classification of transcripts from the nematode Meloidogyne incognita
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* Corresponding author: James P McCarter jmccarte@watson.wustl.edu
Genome Biology 2003, 4:R26 doi:10.1186/gb-2003-4-4-r26
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Sequence mining and transcript profiling to explore cyst nematode parasitism Axel A Elling, Makedonka Mitreva, Xiaowu Gai, John Martin, Justin Recknor, Eric L Davis, Richard S Hussey, Dan Nettleton, James P McCarter, Thomas J Baum BMC Genomics 2009, 10:58 (30 January 2009) |
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Minireview
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NemaPath: online exploration of KEGG-based metabolic pathways for nematodes Todd Wylie, John Martin, Sahar Abubucker, Yong Yin, David Messina, Zhengyuan Wang, James P McCarter, Makedonka Mitreva BMC Genomics 2008, 9:525 (4 November 2008) |
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Genetic tests of ancient asexuality in Root Knot Nematodes reveal recent hybrid origins David H Lunt BMC Evolutionary Biology 2008, 8:194 (7 July 2008) |
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Mehdi Pirooznia, Ping Gong, Xin Guan, Laura S Inouye, Kuan Yang, Edward J Perkins, Youping Deng BMC Bioinformatics 2007, 8(Suppl 7):S7 (1 November 2007) |
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A transcriptomic analysis of the adult stage of the bovine lungworm, Dictyocaulus viviparus Shoba Ranganathan, Shivashankar H Nagaraj, Min Hu, Christina Strube, Thomas Schnieder, Robin B Gasser BMC Genomics 2007, 8:311 (5 September 2007) |
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Codon usage patterns in Nematoda: analysis based on over 25 million codons in thirty-two species Makedonka Mitreva, Michael C Wendl, John Martin, Todd Wylie, Yong Yin, Allan Larson, John Parkinson, Robert H Waterston, James P McCarter Genome Biology 2006, 7:R75 (14 August 2006) A codon usage table for 32 nematode species is presented and suggests that total genomic GC content drives codon usage. |
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Automated methods of predicting the function of biological sequences using GO and BLAST Craig E Jones, Ute Baumann, Alfred L Brown BMC Bioinformatics 2005, 6:272 (15 November 2005) |
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Yvonne M Harcus, John Parkinson, Cecilia Fernández, Jennifer Daub, Murray E Selkirk, Mark L Blaxter, Rick M Maizels Genome Biology 2004, 5:R39 (18 May 2004) Analysis of secreted proteins indicate that they may be undergoing accelerated evolution, either because of relaxed functional constraints, or in response to stronger selective pressure from host immunity. |
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Horizontally transferred genes in plant-parasitic nematodes: a high-throughput genomic approach Elizabeth H Scholl, Jeffrey L Thorne, James P McCarter, David Mck Bird Genome Biology 2003, 4:R39 (19 May 2003) A method for a high-throughput genome screening for horizontally acquired genes is presented, and is illustrated using EST data from three species of root-knot nematode, |