Table 1 |
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|
The most abundantly represented transcripts in the M. incognita cDNA library |
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| Non-redundant GenBank |
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|
|
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| Cluster |
ESTs |
Best identity descriptor |
Accession SW/TR* |
E-value |
C. elegans gene Wormpep |
|
|
|
||||||
| 1 |
MI00951.cl |
77 |
C. elegans UNC-87, thin filament associated |
P37806 |
5e-87 |
F08B6.4 |
| 2 |
MI00033.cl |
64 |
C. elegans MLC-1, myosin light chain |
P19625 |
3e-74 |
C36E6.3 |
| 3 |
MI00502.cl |
64 |
G. pallida SEC-2, sec-2 protein |
Q94569 |
3e-67 |
F02A9.3† |
| 4 |
MI00049.cl |
63 |
C. elegans HSP-12, heat shock protein 20 |
P34328 |
2e-36 |
C14B9.1 |
| 5 |
MI01047.cl |
63 |
Novel |
- |
- |
- |
| 6 |
MI00984.cl |
54 |
M. javanica CAP-1, calponin homolog |
P91763 |
2e-126 |
F28H1.2† |
| 7 |
MI01045.cl |
51 |
Rhizobium NODL, nodulation protein L |
P28266 |
3e-56 |
- |
| 8 |
MI00702.cl |
51 |
C. elegans NHL repeat |
P91268 |
4e-104 |
F21F3.1 |
| 9 |
MI00046.cl |
47 |
C. elegans MIP/Aquaporin-3 water channel |
Q21473 |
1e-54 |
M02F4.8 |
| 10 |
MI00487.cl |
44 |
C. elegans ACT-2, actin 2 |
P10986 |
2e-240 |
M03F4.2 |
| 11 |
MI00784.cl |
39 |
C. elegans MUP-2 troponin-T |
Q20694 |
7e-107 |
F53A9.10 |
| 12 |
MI01043.cl |
39 |
C. elegans cytidylyl transferase |
Q9BL56 |
3e-06 |
Y65B4A.8 |
| 13 |
MI00775.cl |
36 |
C. elegans NLP-21 |
Q9U2B9 |
5e-17 |
Y47D3B.2 |
| 14 |
MI01042.cl |
34 |
C. elegans ADP/ATP Translocase |
P91410 |
1e-54 |
T01B11.4 |
| 15 |
MI00483.cl |
32 |
M. incognita ENG-1, Beta-1,4-endoglucanase |
Q9UA57 |
1e-305 |
- |
| 16 |
MI01040.cl |
31 |
Novel |
- |
- |
- |
| 17 |
MI00027.cl |
30 |
C. elegans MLC-3, myosin light chain family |
P53014 |
2e-71 |
F09F7.2 |
| 18 |
MI01113.cl |
29 |
Human APG-5, apoptosis specific protein |
O60875 |
1e-16 |
F08.H9.4† |
| 19 |
MI00774.cl |
29 |
Dictyostelium ACRA, adenylate cyclase |
Q9U9S7 |
2e-20 |
C24A8.3† |
| 20 |
MI00721.cl |
29 |
C. elegans LDH-1, l-lactate dehydrogenase |
Q27888 |
7e-124 |
F13D12.2 |
| 21 |
MI00040.cl |
29 |
C. elegans GST-7, glutathione S-transferase |
P91254 |
7e-42 |
F11G11.2 |
| 22 |
MI01038.cl |
28 |
Mouse TNRC11, Opa repeat |
Q62006 |
5e-19 |
H20J18.1 |
| 23 |
MI00629.cl |
28 |
C. elegans C4-type steroid receptor zinc finger |
O16890 |
2e-23 |
F13A2.8 |
| 24 |
MI01036.cl |
26 |
Novel |
- |
- |
- |
| 25 |
MI01034.cl |
25 |
C. elegans arginine kinase phosphotransferase |
Q10454 |
1e-91 |
F46H5.3 |
|
|
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|
*SW/TR is SWISS-PROT and TrEMBL Proteinknowledgebase [105]. †C. elegans homolog present but with a lower probability match than the best GenBank descriptor. |
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|
McCarter et al. Genome Biology 2003 4:R26 doi:10.1186/gb-2003-4-4-r26 |
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