|
Gene Ontology mappings |
||||||||
| (a) Biological process |
||||||||
|
|
||||||||
| Categories and subcategories |
Representation |
% Representation of total |
||||||
|
|
||||||||
| Metabolism |
133 |
75% |
||||||
| Protein metabolism and modifications |
57 |
32% |
||||||
| Protein modification |
25 |
14% |
||||||
| Protein biosynthesis |
15 |
8% |
||||||
| Protein degradation |
14 |
8% |
||||||
| Protein folding |
3 |
2% |
||||||
| Glycoprotein metabolism |
1 |
1% |
||||||
| Catabolism |
24 |
13% |
||||||
| Protein degradation |
14 |
8% |
||||||
| Glycolysis |
8 |
4% |
||||||
| Phosphate metabolism |
23 |
13% |
||||||
| Kinase |
19 |
11% |
||||||
| Phosphatase |
4 |
2% |
||||||
| Biosynthesis |
17 |
10% |
||||||
| Protein biosynthesis |
15 |
8% |
||||||
| Electron transport |
21 |
12% |
||||||
| Nucleic acid metabolism |
16 |
9% |
||||||
| Transcription |
13 |
7% |
||||||
| RNA metabolism |
2 |
1% |
||||||
| DNA metabolism |
1 |
1% |
||||||
| Carbohydrate metabolism |
11 |
6% |
||||||
| Glycolysis |
8 |
4% |
||||||
| Amino acid and derivative metabolism |
4 |
2% |
||||||
| One-carbon compound metabolism |
3 |
2% |
||||||
| Oxygen and radical metabolism |
3 |
2% |
||||||
| Nitrogen metabolism |
1 |
1% |
||||||
| Secondary metabolism |
1 |
1% |
||||||
| Transport |
24 |
13% |
||||||
| Ion transport (including channels) |
8 |
4% |
||||||
| Protein transport and trafficing |
4 |
2% |
||||||
| Amino acid transport |
2 |
1% |
||||||
| Cell communication |
21 |
12% |
||||||
| Signal transduction |
20 |
11% |
||||||
| Intracellular signaling cascade |
14 |
8% |
||||||
| Cell surface receptor linked signal transduction |
4 |
2% |
||||||
| Response to external stimulus |
1 |
1% |
||||||
| (b) Cellular component |
||||||||
|
|
||||||||
| Categories and subcategories |
Representation |
%Representation of total |
||||||
|
|
||||||||
| Cell |
79 |
81% |
||||||
| Intracellular |
62 |
64% |
||||||
| Cytoplasm |
42 |
43% |
||||||
| Ribosome |
29 |
30% |
||||||
| Cytoskeleton |
5 |
5% |
||||||
| Mitochondria |
5 |
5% |
||||||
| Proteasome |
2 |
2% |
||||||
| Translation factor |
1 |
1% |
||||||
| Nucleus |
15 |
15% |
||||||
| Unspecified |
3 |
3% |
||||||
| Plasma membrane |
1 |
1% |
||||||
| Membrane |
22 |
23% |
||||||
| Unspecified |
16 |
16% |
||||||
| Mitochondrial membrane |
4 |
4% |
||||||
| Integral membrane |
2 |
2% |
||||||
| Extracellular |
15 |
15% |
||||||
| Unlocalized |
3 |
3% |
||||||
| (c) Molecular function |
||||||||
|
|
||||||||
| Categories and subcategories |
Representation |
% Representation of total |
||||||
|
|
||||||||
| Ligand binding / carrier |
135 |
52% |
||||||
| Nucleic acid binding |
44 |
17% |
||||||
| Nucleotide binding |
40 |
15% |
||||||
| Calcium binding |
22 |
8% |
||||||
| Protein binding |
12 |
5% |
||||||
| Carbohydrate binding |
7 |
3% |
||||||
| Electron transport |
3 |
1% |
||||||
| Lipid binding |
3 |
1% |
||||||
| Heavy metal binding |
1 |
<1% |
||||||
| Oxygen binding |
1 |
<1% |
||||||
| Oxygen transport |
1 |
<1% |
||||||
| Enzyme |
101 |
39% |
||||||
| Hydrolase |
37 |
14% |
||||||
| Transferase |
26 |
10% |
||||||
| Oxidoreductase |
22 |
8% |
||||||
| Kinase |
15 |
6% |
||||||
| Phosphatase |
8 |
3% |
||||||
| Helicase |
4 |
2% |
||||||
| Lyase |
4 |
2% |
||||||
| Aldolase |
2 |
1% |
||||||
| Ligase |
2 |
1% |
||||||
| Isomerase |
1 |
<1% |
||||||
| Monooxygenase |
1 |
<1% |
||||||
| Transporter |
14 |
5% |
||||||
| Channel/pore |
5 |
2% |
||||||
| Carrier |
4 |
2% |
||||||
| Intracellular transporter |
3 |
1% |
||||||
| Ion transporter |
3 |
1% |
||||||
| Oxygen transporter |
1 |
<1% |
||||||
| Signal transducer |
9 |
3% |
||||||
| Receptor |
5 |
2% |
||||||
| Receptor signaling protein |
3 |
1% |
||||||
| Structural molecule |
5 |
2% |
||||||
| Enzyme regulator |
4 |
2% |
||||||
| Cell adhesion |
1 |
<1% |
||||||
| Motor |
1 |
<1% |
||||||
| Transcriptional regulator |
1 |
<1% |
||||||
|
(a) 178 clusters generated 336 multiple mappings. Percentage representation is based on 178. (b) 97 clusters generated 107 multiple mappings. Percentage representation is based on 97. (c) 261 clusters generated 321 multiple mappings. Percentage representation is based on 261. | ||||||||
McCarter et al. Genome Biology 2003 4:R26 doi:10.1186/gb-2003-4-4-r26 |
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