MatchMiner: a tool for batch navigation among gene and gene product identifiers
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* Corresponding author: John N Weinstein weinstein@dtpax2.ncifcrf.gov
Genome Biology 2003, 4:R27 doi:10.1186/gb-2003-4-4-r27
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BioMed Central: 21 citations
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Methodology article
Identifier mapping performance for integrating transcriptomics and proteomics experimental results Roger S Day, Kevin K McDade, Uma R Chandran, Alex Lisovich, Thomas P Conrads, Brian L Hood, VS Kolli, David Kirchner, Traci Litzi, G Maxwell BMC Bioinformatics 2011, 12:213 (27 May 2011) |
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Software
Martijn P van Iersel, Alexander R Pico, Thomas Kelder, Jianjiong Gao, Isaac Ho, Kristina Hanspers, Bruce R Conklin, Chris T Evelo BMC Bioinformatics 2010, 11:5 (4 January 2010) |
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Research
Nicole Pressinotti, Helmut Klocker, Georg Schäfer, Van-Duc Luu, Markus Ruschhaupt, Ruprecht Kuner, Eberhard Steiner, Annemarie Poustka, Georg Bartsch, Holger Sültmann Molecular Cancer 2009, 8:130 (27 December 2009) |
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Research article
Impact of biospecimens handling on biomarker research in breast cancer Loris De Cecco, Valeria Musella, Silvia Veneroni, Vera Cappelletti, Italia Bongarzone, Maurizio Callari, Barbara Valeri, Marco A Pierotti, Maria Daidone BMC Cancer 2009, 9:409 (24 November 2009) |
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Software
ArrayIDer: automated structural re-annotation pipeline for DNA microarrays Bart HJ van den Berg, Jay H Konieczka, Fiona M McCarthy, Shane C Burgess BMC Bioinformatics 2009, 10:30 (23 January 2009) |
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Software
Zhong-Xi Huang, Hui-Yong Tian, Zhen-Fu Hu, Yi-Bo Zhou, Jin Zhao, Kai-Tai Yao BMC Bioinformatics 2008, 9:308 (13 July 2008) |
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Research article
Application of a correlation correction factor in a microarray cross-platform reproducibility study Kellie J Archer, Catherine I Dumur, G Scott Taylor, Michael D Chaplin, Anthony Guiseppi-Elie, Geraldine Grant, Andrea Ferreira-Gonzalez, Carleton T Garrett BMC Bioinformatics 2007, 8:447 (15 November 2007) |
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Research article
Stefano Campanaro, Simone Picelli, Rossella Torregrossa, Laura Colluto, Monica Ceol, Dorella Del Prete, Angela D'Angelo, Giorgio Valle, Franca Anglani BMC Genomics 2007, 8:383 (22 October 2007) |
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Software
Richard G Côté, Philip Jones, Lennart Martens, Samuel Kerrien, Florian Reisinger, Quan Lin, Rasko Leinonen, Rolf Apweiler, Henning Hermjakob BMC Bioinformatics 2007, 8:401 (18 October 2007) |
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Research article
Portraits of breast cancer progression Gul S Dalgin, Gabriela Alexe, Daniel Scanfeld, Pablo Tamayo, Jill P Mesirov, Shridar Ganesan, Charles DeLisi, Gyan Bhanot BMC Bioinformatics 2007, 8:291 (6 August 2007) |
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Software
IDconverter and IDClight: Conversion and annotation of gene and protein IDs Andreu Alibés, Patricio Yankilevich, Andrés Cañada, Ramón Díaz-Uriarte BMC Bioinformatics 2007, 8:9 (10 January 2007) |
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Software
CROPPER: a metagene creator resource for cross-platform and cross-species compendium studies Jussi Paananen, Markus Storvik, Garry Wong BMC Bioinformatics 2006, 7:418 (22 September 2006) |
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Software
Integrated functional visualization of eukaryotic genomes Rohit Ghai, Hannes Lindemann, Trinad Chakraborty BMC Bioinformatics 2006, 7:348 (18 July 2006) |
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Database
Sylvia M Major, Satoshi Nishizuka, Daisaku Morita, Rick Rowland, Margot Sunshine, Uma Shankavaram, Frank Washburn, Daniel Asin, Hosein Kouros-Mehr, David Kane, John N Weinstein BMC Bioinformatics 2006, 7:192 (6 April 2006) The AbMiner database provides extensive information on more than 600 monoclonal antibodies and their antigens, validated in 60 cell lines from nine different tissues, and links to a variety of genomic and proteomic databases.
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Research article
Asa J Oudes, Jared C Roach, Laura S Walashek, Lillian J Eichner, Lawrence D True, Robert L Vessella, Alvin Y Liu BMC Cancer 2005, 5:86 (22 July 2005) |
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Correspondence
Barry R Zeeberg, Joseph Riss, David W Kane, Kimberly J Bussey, Edward Uchio, W Marston Linehan, J Carl Barrett, John N Weinstein BMC Bioinformatics 2004, 5:80 (23 June 2004) |
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Research article
Comprehensive analysis of the base composition around the transcription start site in Metazoa Stein Aerts, Gert Thijs, Michal Dabrowski, Yves Moreau, Bart De Moor BMC Genomics 2004, 5:34 (1 June 2004) The local base composition (GC content) varies significantly around the transcription start sites of annotated genes in several metazoan genomes, but the degree of the variation differs among animal classes.
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Software
Guohui Zhou, Xinyu Wen, Hang Liu, Michael J Schlicht, Martin J Hessner, Peter J Tonellato, Milton W Datta BMC Bioinformatics 2004, 5:46 (29 April 2004) |
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Method
Jae K Lee, Kimberly J Bussey, Fuad G Gwadry, William Reinhold, Gregory Riddick, Sandra L Pelletier, Satoshi Nishizuka, Gergely Szakacs, Jean-Phillipe Annereau, Uma Shankavaram, Samir Lababidi, Lawrence H Smith, Michael M Gottesman, John N Weinstein Genome Biology 2003, 4:R82 (25 November 2003) Microarray gene-expression profiles are generally validated one gene at a time by real-time RT-PCR. A different approach is described, based on simultaneous mutual validation of large numbers of genes using two different expression-profiling platforms. |
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Research article
Cross-platform comparison and visualisation of gene expression data using co-inertia analysis Aedín C Culhane, Guy Perrière, Desmond G Higgins BMC Bioinformatics 2003, 4:59 (21 November 2003) |
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Software
GoMiner: a resource for biological interpretation of genomic and proteomic data Barry R Zeeberg, Weimin Feng, Geoffrey Wang, May D Wang, Anthony T Fojo, Margot Sunshine, Sudarshan Narasimhan, David W Kane, William C Reinhold, Samir Lababidi, Kimberly J Bussey, Joseph Riss, J Barrett, John N Weinstein Genome Biology 2003, 4:R28 (25 March 2003) GoMiner, a program package that organizes lists of 'interesting' genes for biological interpretation in the context of the Gene Ontology, has been developed. |