Table 2 |
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|
A comparison of different alternative splicing databases and tools |
||||||||
| Types of sequence supported |
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|
|
||||||||
| Referenced sequence |
Protein |
mRNA |
ESTs |
Statistics |
Alignment tool |
Literature search |
Organisms |
|
|
|
||||||||
| SpliceNest |
Genomic sequence |
Yes |
Yes |
90,000 EST clusters |
REPuter [23] |
Human and Arabidopsis |
||
| PALS db (Release 2) |
Message RNA |
Yes |
Yes |
19,936 (human) |
BLAST |
Human and mouse |
||
| 16,615 (mouse) |
||||||||
| UniGene clusters |
||||||||
| SpliceDB |
Genomic sequence |
Yes |
Yes |
43,337 splice site pairs |
BLAST |
Yes |
Mammalian |
|
| AsMmDB (version 1.0) |
Genomic sequence |
Yes |
Yes |
1,563 alternative splicing genes |
FASTA |
Yes |
Human, mouse and rat |
|
| ASDB (version 2.1) |
Yes |
1,922 proteins |
Yes |
|||||
| HASDB |
Genomic sequence |
Yes |
Yes |
6,201 UniGene clusters |
BLAST |
Human |
||
| BLAT server |
User-submitted sequence |
Yes |
Yes |
Yes |
BLAT |
Human and mouse |
||
| ProSplicer |
Genomic sequence |
Yes |
Yes |
Yes |
21,786 genes |
BLAST (protein) SIM4 (mRNA and ESTs) |
Human |
|
|
|
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|
Huang et al. Genome Biology 2003 4:R29 doi:10.1186/gb-2003-4-4-r29 |
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