This article has not been peer reviewed.
DAVID: Database for Annotation, Visualization, and Integrated Discovery
-
* Corresponding author: Glynn Dennis GDennis@niaid.nih.gov
Genome Biology 2003, 4:P3 doi:10.1186/gb-2003-4-5-p3
Accesses
- Last 30 days: 375 accesses
- Last year: 3925 accesses
- All time: 29073 accesses
Cited by
BioMed Central: 224 citations
|
Research article
Hansook Kim Chong, Jacob Biesinger, Young-Kyo Seo, Xiaohui Xie, Timothy F Osborne BMC Genomics 2012, 13:51 (1 February 2012) |
|
Research article
Genome-wide landscape of liver X receptor chromatin binding and gene regulation in human macrophages Petri Pehkonen, Lynn Welter-Stahl, Janine Diwo, Jussi Ryynanen, Anke Wienecke-Baldacchino, Sami Heikkinen, Eckardt Treuter, Knut R Steffensen, Carsten Carlberg BMC Genomics 2012, 13:50 (31 January 2012) |
|
Research
Michael F Gallagher, Cynthia CBB Heffron, Alexandros Laios, Sharon A O'Toole, Brendan Ffrench, Paul C Smyth, Richard J Flavin, Salah A Elbaruni, Cathy D Spillane, Cara M Martin, Orla M Shelis, John J O'Leary Journal of Ovarian Research 2012, 5:2 (19 January 2012) |
|
Proceedings
Hatice Osmanbeyoglu, Ryan J Hartmaier, Steffi Oesterreich, Xinghua Lu BMC Genomics 2012, 13(Suppl 1):S1 (17 January 2012) |
|
Research article
Protease-associated cellular networks in malaria parasite Plasmodium falciparum Timothy G Lilburn, Hong Cai, Zhan Zhou, Yufeng Wang BMC Genomics 2011, 12(Suppl 5):S9 (23 December 2011) |
|
Research article
Jin Wang, Martin Haubrock, Kun-Ming Cao, Xu Hua, Chen-Yu Zhang, Edgar Wingender, Jie Li BMC Systems Biology 2011, 5:199 (16 December 2011) |
|
Proceedings
Exploring molecular links between lymph node invasion and cancer prognosis in human breast cancer Sangwoo Kim, Hojung Nam, Doheon Lee BMC Systems Biology 2011, 5(Suppl 2):S4 (14 December 2011) |
|
Proceedings
Swee Toh, Philip Prathipati, Efthimios Motakis, Chee Keong Kwoh, Surya Yenamandra, Vladimir A Kuznetsov BMC Genomics 2011, 12(Suppl 3):S24 (30 November 2011) |
|
Proceedings
Sheng-An Lee, Theresa Tsao, Ko-Chun Yang, Han Lin, Yu-Lun Kuo, Chien-Hsiang Hsu, Wen-Kuei Lee, Kuo-Chuan Huang, Cheng-Yan Kao BMC Bioinformatics 2011, 12(Suppl 13):S20 (30 November 2011) |
|
Research article
Genome-wide analysis of gene expression during Xenopus tropicalis tadpole tail regeneration Nick R Love, Yaoyao Chen, Boyan Bonev, Michael J Gilchrist, Lynne Fairclough, Robert Lea, Timothy J Mohun, Roberto Paredes, Leo AH Zeef, Enrique Amaya BMC Developmental Biology 2011, 11:70 (15 November 2011) |
|
Research article
Sex-dimorphism in Cardiac Nutrigenomics: effect of Trans fat and/or Monosodium Glutamate consumption Kate S Collison, Marya Z Zaidi, Zakia Maqbool, Soad M Saleh, Angela Inglis, Nadine J Makhoul, Razan Bakheet, Mohammed Shoukri, Futwan A Al-Mohanna BMC Genomics 2011, 12:555 (12 November 2011) |
|
Research article
Melissa B Davis, Inigo SanGil, Grace Berry, Rashidat Olayokun, Lori H Neves BMC Developmental Biology 2011, 11:66 (3 November 2011) |
|
Research article
Joost J van Soest, Oliver W Stockhammer, Anita Ordas, Guido V Bloemberg, Herman P Spaink, Annemarie H Meijer BMC Immunology 2011, 12:58 (17 October 2011) |
|
Research article
Meta-analysis and genome-wide interpretation of genetic susceptibility to drug addiction Chuan-Yun Li, Wei-Zhen Zhou, Ping-Wu Zhang, Catherine Johnson, Liping Wei, George R Uhl BMC Genomics 2011, 12:508 (15 October 2011) |
|
Methodology article
Identifying cancer biomarkers by network-constrained support vector machines Li Chen, Jianhua Xuan, Rebecca B Riggins, Robert Clarke, Yue Wang BMC Systems Biology 2011, 5:161 (12 October 2011) |
|
Research article
Chung-Il An, Yao Dong, Nobuko Hagiwara BMC Developmental Biology 2011, 11:59 (10 October 2011) |
|
Research article
Deciphering c-MYC-regulated genes in two distinct tissues Samuel C Robson, Lesley Ward, Helen Brown, Heather Turner, Ewan Hunter, Stella Pelengaris, Michael Khan BMC Genomics 2011, 12:476 (30 September 2011) |
|
Research article
Sarah E Gonsalves, Scott J Neal, Amy S Kehoe, J Westwood BMC Genomics 2011, 12:475 (29 September 2011) |
|
Research article
Decreased expression of B cell related genes in leukocytes of women with Parkinson's disease Merav Kedmi, Anat Bar-Shira, Tanya Gurevich, Nir Giladi, Avi Orr-Urtreger Molecular Neurodegeneration 2011, 6:66 (23 September 2011) |
|
Software
Cistrome: an integrative platform for transcriptional regulation studies Tao Liu, Jorge A Ortiz, Len Taing, Clifford A Meyer, Bernett Lee, Yong Zhang, Hyunjin Shin, Swee S Wong, Jian Ma, Ying Lei, Utz J Pape, Michael Poidinger, Yiwen Chen, Kevin Yeung, Myles Brown, Yaron Turpaz, X Shirley Liu Genome Biology 2011, 12:R83 (22 August 2011) A Galaxy-based web application for integrative analysis of ChIP data
|
|
Research article
Hangxing Ren, Li Li, Hongwei Su, Lingyang Xu, Caihong Wei, Li Zhang, Hongbin Li, Wenzhong Liu, Lixin Du BMC Genomics 2011, 12:411 (14 August 2011) |
|
Research article
Olivia Wansbury, Alan Mackay, Naoko Kogata, Costas Mitsopoulos, Howard Kendrick, Kathryn Davidson, Christiana Ruhrberg, Jorge S Reis-Filho, Matthew J Smalley, Marketa Zvelebil, Beatrice A Howard Breast Cancer Research 2011, 13:R79 (11 August 2011) |
|
Research
Ying Zhang, Yutaka Yoshida, Bo Xu, Sameh Magdeldin, Hidehiko Fujinaka, Zan Liu, Masahito Miyamoto, Eishin Yaoita, Tadashi Yamamoto Proteome Science 2011, 9:47 (10 August 2011) |
|
Short Report
Limited redundancy in genes regulated by Cyclin T2 and Cyclin T1 Rajesh Ramakrishnan, Wendong Yu, Andrew P Rice BMC Research Notes 2011, 4:260 (26 July 2011) |
|
Research article
Edward Dere, Raymond Lo, Trine Celius, Jason Matthews, Timothy R Zacharewski BMC Genomics 2011, 12:365 (15 July 2011) |
|
Methodology
Ryan KC Yuen, Ruby Jiang, Maria S Peñaherrera, Deborah E McFadden, Wendy P Robinson Epigenetics & Chromatin 2011, 4:10 (13 July 2011) |
|
Research
Lin Ruan, Xin-Hui Li, Xun-Xun Wan, Hong Yi, Cui Li, Mao-Yu Li, Peng-Fei Zhang, Gu-Qing Zeng, Jia-Quan Qu, Qiu-Yan He, Jian-Huang Li, Yu Chen, Zhu-Chu Chen, Zhi-Qiang Xiao Proteome Science 2011, 9:35 (28 June 2011) |
|
Research
Expression analysis of asthma candidate genes during human and murine lung development Erik Melén, Alvin T Kho, Sunita Sharma, Roger Gaedigk, J Steven Leeder, Thomas J Mariani, Vincent J Carey, Scott T Weiss, Kelan G Tantisira Respiratory Research 2011, 12:86 (23 June 2011) |
|
Research article
Patrick R Secor, Garth A James, Philip Fleckman, John E Olerud, Kate McInnerney, Philip S Stewart BMC Microbiology 2011, 11:143 (21 June 2011) |
|
Proceedings
Jejunal gene expression patterns correlate with severity of systemic infection in chicken Dirkjan Schokker, Mari A Smits, Johanna MJ Rebel BMC Proceedings 2011, 5(Suppl 4):S4 (3 June 2011) |
|
Research
Integrated metabolome and transcriptome analysis of the NCI60 dataset Gang Su, Charles F Burant, Christopher W Beecher, Brian D Athey, Fan Meng BMC Bioinformatics 2011, 12(Suppl 1):S36 (15 February 2011) |
|
Research
Investigation gene and microRNA expression in glioblastoma Hua Dong, Hoicheong Siu, Li Luo, Xiangzhong Fang, Li Jin, Momiao Xiong BMC Genomics 2010, 11(Suppl 3):S16 (1 December 2010) |
|
Research article
Manoj K Gupta, Damir J Illich, Andrea Gaarz, Matthias Matzkies, Filomain Nguemo, Kurt Pfannkuche, Huamin Liang, Sabine Classen, Michael Reppel, Joachim L Schultze, Jürgen Hescheler, Tomo Šarić BMC Developmental Biology 2010, 10:98 (15 September 2010) |
|
Research
Amy E Rose, Jaya M Satagopan, Carole Oddoux, Qin Zhou, Ruliang Xu, Adam B Olshen, Jessie Z Yu, Atreya Dash, Jerome Jean-Gilles, Victor Reuter, William L Gerald, Peng Lee, Iman Osman Journal of Translational Medicine 2010, 8:70 (22 July 2010) |
|
Research
Ramón García-Escudero, Ana B Martínez-Cruz, Mirentxu Santos, Corina Lorz, Carmen Segrelles, Guillermo Garaulet, Cristina Saiz-Ladera, Clotilde Costa, Águeda Buitrago-Pérez, Marta Dueñas, Jesús M Paramio Molecular Cancer 2010, 9:193 (14 July 2010) |
|
Brief reports
GTC: A web server for integrating systems biology data with web tools and desktop applications Dan Tenenbaum, J Christopher Bare, Nitin S Baliga Source Code for Biology and Medicine 2010, 5:7 (13 July 2010) |
|
Methodology article
PCA2GO: a new multivariate statistics based method to identify highly expressed GO-Terms Marc Bruckskotten, Mario Looso, Franz Cemiĉ, Anne Konzer, Jürgen Hemberger, Marcus Krüger, Thomas Braun BMC Bioinformatics 2010, 11:336 (21 June 2010) |
|
Research article
Keren Byrne, Tony Vuocolo, Cedric Gondro, Jason D White, Noelle E Cockett, Tracy Hadfield, Christopher A Bidwell, Jolena N Waddell, Ross L Tellam BMC Genomics 2010, 11:378 (15 June 2010) |
|
Research article
Transcriptional regulation of gene expression clusters in motor neurons following spinal cord injury Jesper Ryge, Ole Winther, Jacob Wienecke, Albin Sandelin, Ann-Charlotte Westerdahl, Hans Hultborn, Ole Kiehn BMC Genomics 2010, 11:365 (9 June 2010) |
|
Research article
Bayesian integrated modeling of expression data: a case study on RhoG Rashi Gupta, Dario Greco, Petri Auvinen, Elja Arjas BMC Bioinformatics 2010, 11:295 (1 June 2010) |
|
Research article
Bioinformatic identification and characterization of human endothelial cell-restricted genes Manoj Bhasin, Lei Yuan, Derin B Keskin, Hasan H Otu, Towia A Libermann, Peter Oettgen BMC Genomics 2010, 11:342 (28 May 2010) |
|
Research article
Nicole Verhofstad, Jeroen LA Pennings, Conny van Oostrom, Jan van Benthem, Frederik J van Schooten, Harry van Steeg, Roger WL Godschalk BMC Genomics 2010, 11:333 (26 May 2010) |
|
Research article
Paola Piantoni, Massimo Bionaz, Daniel E Graugnard, Kristy M Daniels, Robin E Everts, Sandra L Rodriguez-Zas, Harris A Lewin, Hurley L Hurley, Michael Akers, Juan J Loor BMC Genomics 2010, 11:331 (26 May 2010) |
|
Software
PhenoFam-gene set enrichment analysis through protein structural information Maciej Paszkowski-Rogacz, Mikolaj Slabicki, M Teresa Pisabarro, Frank Buchholz BMC Bioinformatics 2010, 11:254 (17 May 2010) |
|
Research article
Michael Pierre, Benoît DeHertogh, Anthoula Gaigneaux, Bertrand DeMeulder, Fabrice Berger, Eric Bareke, Carine Michiels, Eric Depiereux BMC Cancer 2010, 10:176 (30 April 2010) |
|
Research article
Identification of copy number variations and common deletion polymorphisms in cattle Joon Bae, Hyun Cheong, Lyoung Kim, Suk NamGung, Tae Park, Ji-Yong Chun, Jason Kim, Charisse Pasaje, Jin Lee, Hyoung Shin BMC Genomics 2010, 11:232 (9 April 2010) |
|
Research article
Whole transcriptome analysis of the hippocampus: toward a molecular portrait of epileptogenesis Oswaldo K Okamoto, Luciana Janjoppi, Felipe M Bonone, Aline P Pansani, Alexandre V da Silva, Fúlvio A Scorza, Esper A Cavalheiro BMC Genomics 2010, 11:230 (8 April 2010) |
|
Research
Young-Tae Ro, Bo-Kwang Jang, Chan Shin, Eui U Park, Chul Kim, Sung-Il Yang Journal of Biomedical Science 2010, 17:18 (17 March 2010) |
|
Method
Jui-Hung Hung, Troy W Whitfield, Tun-Hsiang Yang, Zhenjun Hu, Zhiping Weng, Charles DeLisi Genome Biology 2010, 11:R23 (26 February 2010) A gene set enrichment analysis method for including network topology in the identification of genes involved in phenotypic alterations is described. Classifications: Genome studies, Methods |
|
Research article
Hsei-Wei Wang, Yu-Hsuan Wu, Jui-Yu Hsieh, Muh-Lii Liang, Meng-En Chao, Da-Jung Liu, Ming-Ta Hsu, Tai-Tong Wong BMC Genomics 2010, 11:132 (24 February 2010) |
|
Research article
Adam Labbé, Ramachander VN Turaga, Éric R Paquet, Chantal Garand, Michel Lebel BMC Genomics 2010, 11:127 (22 February 2010) |
|
Research article
Bart M Maślikowski, Benjamin D Néel, Ying Wu, Lizhen Wang, Natalie A Rodrigues, Germain Gillet, Pierre-André Bédard BMC Cancer 2010, 10:41 (12 February 2010) |
|
Research
Yingchao Liu, Jinsong Wu, Guoquan Yan, Ruiping Hou, Dongxiao Zhuang, Luping Chen, Qi Pang, Jianhong Zhu Proteome Science 2010, 8:2 (29 January 2010) |
|
Research article
Marit S Bratlie, Jostein Johansen, Finn Drabløs BMC Genomics 2010, 11:71 (28 January 2010) |
|
Research article
Beatrice A McGivney, Suzanne S Eivers, David E MacHugh, James N MacLeod, Grace M O'Gorman, Stephen DE Park, Lisa M Katz, Emmeline W Hill BMC Genomics 2009, 10:638 (30 December 2009) |
|
Research article
Increased epithelial stem cell traits in advanced endometrial endometrioid carcinoma Shing-Jyh Chang, Tao-Yeuan Wang, Chan-Yen Tsai, Tzu-Fang Hu, Margaret Chang, Hsei-Wei Wang BMC Genomics 2009, 10:613 (16 December 2009) |
|
Research article
Global transcriptional response after exposure of fission yeast cells to ultraviolet light Henriette C Skjølberg, Øyvind Fensgård, Hilde Nilsen, Beáta Grallert, Erik Boye BMC Cell Biology 2009, 10:87 (16 December 2009) |
|
Research article
Dissecting the dynamics of dysregulation of cellular processes in mouse mammary gland tumor Wieslawa I Mentzen, Matteo Floris, Alberto de la Fuente BMC Genomics 2009, 10:601 (13 December 2009) |
|
Research article
Sebastian Schmeier, Cameron R MacPherson, Magbubah Essack, Mandeep Kaur, Ulf Schaefer, Harukazu Suzuki, Yoshihide Hayashizaki, Vladimir B Bajic BMC Genomics 2009, 10:595 (10 December 2009) This article is part of a collection on FANTOM4 |
|
Research article
RNA profiles of rat olfactory epithelia: individual and age related variations Maud Rimbault, Stéphanie Robin, Amaury Vaysse, Francis Galibert BMC Genomics 2009, 10:572 (2 December 2009) |
|
Methodology article
Illumina WG-6 BeadChip strips should be normalized separately Wei Shi, Ashish Banerjee, Matthew E Ritchie, Steve Gerondakis, Gordon K Smyth BMC Bioinformatics 2009, 10:372 (11 November 2009) |
|
Research article
Ying Wang, Vinayak Brahmakshatriya, Huifeng Zhu, Blanca Lupiani, Sanjay M Reddy, Byung-Jun Yoon, Preethi H Gunaratne, Jong Kim, Rui Chen, Junjun Wang, Huaijun Zhou BMC Genomics 2009, 10:512 (5 November 2009) |
|
Research article
Rafael Queiroz, Corinna Benz, Kurt Fellenberg, Jörg D Hoheisel, Christine Clayton BMC Genomics 2009, 10:495 (26 October 2009) |
|
Research article
Riccardo D'Elia, Matthew L deSchoolmeester, Leo AH Zeef, Steven H Wright, Alan D Pemberton, Kathryn J Else BMC Genomics 2009, 10:492 (24 October 2009) |
|
Proceedings
Natàlia Garcia-Reyero, Ira R Adelman, Dalma Martinović, Li Liu, Nancy D Denslow BMC Bioinformatics 2009, 10(Suppl 11):S11 (8 October 2009) |
|
Proceedings
Comparing gene annotation enrichment tools for functional modeling of agricultural microarray data Bart Berg, Chamali Thanthiriwatte, Prashanti Manda, Susan M Bridges BMC Bioinformatics 2009, 10(Suppl 11):S9 (8 October 2009) |
|
Methodology article
Generation of Gene Ontology benchmark datasets with various types of positive signal Petri Törönen, Petri Pehkonen, Liisa Holm BMC Bioinformatics 2009, 10:319 (7 October 2009) |
|
Research article
Béatrice Regnault, José Osorio y Fortea, Dongmei Miao, George Eisenbarth, Evie Melanitou BMC Medical Genomics 2009, 2:63 (2 October 2009) |
|
Research
King-Hwa Ling, Chelsee A Hewitt, Tim Beissbarth, Lavinia Hyde, Kakoli Banerjee, Pike-See Cheah, Ping Z Cannon, Christopher N Hahn, Paul Q Thomas, Gordon K Smyth, Seong-Seng Tan, Tim Thomas, Hamish S Scott Genome Biology 2009, 10:R104 (2 October 2009) SAGE analysis reveals spatiotemporally regulated transcripts and overlapping sense and antisense transcripts that are important for mouse cerebral cortex development |
|
Research article
Petri Törönen, Pauli J Ojala, Pekka Marttinen, Liisa Holm BMC Bioinformatics 2009, 10:307 (23 September 2009) |
|
Research article
Kwang H Choi, Brandon W Higgs, Serge Weis, Jonathan Song, Ida C Llenos, Jeannette R Dulay, Robert H Yolken, Maree J Webster BMC Psychiatry 2009, 9:57 (16 September 2009) Both typical and atypical antipsychotics affect different biological processes in the liver by changing gene expression profiles, providing valuable information for the development of future drugs with less side effects.
|
|
Research article
Mikhail Dozmorov, Wenxin Wu, Kaushik Chakrabarty, J Leland Booth, Robert E Hurst, K Mark Coggeshall, Jordan P Metcalf BMC Infectious Diseases 2009, 9:152 (10 September 2009) |
|
Research article
Laura E Pascal, Young Goo, Ricardo ZN Vêncio, Laura S Page, Amber A Chambers, Emily S Liebeskind, Thomas K Takayama, Lawrence D True, Alvin Y Liu BMC Cancer 2009, 9:317 (8 September 2009) |
|
Software
Genephony: a knowledge management tool for genome-wide research Angelo Nuzzo, Alberto Riva BMC Bioinformatics 2009, 10:278 (3 September 2009) |
|
Research
Expression profiling identifies genes involved in emphysema severity Santiyagu Francis, Jill E Larsen, Sandra J Pavey, Rayleen V Bowman, Nicholas K Hayward, Kwun M Fong, Ian A Yang Respiratory Research 2009, 10:81 (2 September 2009) |
|
Research article
Christiaan GJ Saris, Steve Horvath, Paul WJ van Vught, Michael A van Es, Hylke M Blauw, Tova F Fuller, Peter Langfelder, Joseph DeYoung, John HJ Wokke, Jan H Veldink, Leonard H van den Berg, Roel A Ophoff BMC Genomics 2009, 10:405 (27 August 2009) |
|
Research article
Joseph A Nielsen, Pierre Lau, Dragan Maric, Jeffery L Barker, Lynn D Hudson BMC Neuroscience 2009, 10:98 (19 August 2009) |
|
Research article
Paul Lacaze, Sobia Raza, Garwin Sing, David Page, Thorsten Forster, Petter Storm, Marie Craigon, Tarif Awad, Peter Ghazal, Tom C Freeman BMC Genomics 2009, 10:372 (10 August 2009) |
|
Research article
The steady-state transcriptome of the four major life-cycle stages of Trypanosoma cruzi Todd A Minning, D Brent Weatherly, James Atwood, Ron Orlando, Rick L Tarleton BMC Genomics 2009, 10:370 (7 August 2009) |
|
Research article
Candidate pathways and genes for prostate cancer: a meta-analysis of gene expression data Ivan P Gorlov, Jinyoung Byun, Olga Y Gorlova, Ana M Aparicio, Eleni Efstathiou, Christopher J Logothetis BMC Medical Genomics 2009, 2:48 (4 August 2009) |
|
Research article
Quan-Yong Zhou, Ming-Di Fang, Ting-Hua Huang, Chang-Chun Li, Mei Yu, Shu-Hong Zhao BMC Genomics 2009, 10:337 (26 July 2009) |
|
Research article
Identification of pediatric septic shock subclasses based on genome-wide expression profiling Hector R Wong, Natalie Cvijanovich, Richard Lin, Geoffrey L Allen, Neal J Thomas, Douglas F Willson, Robert J Freishtat, Nick Anas, Keith Meyer, Paul A Checchia, Marie Monaco, Kelli Odom, Thomas P Shanley BMC Medicine 2009, 7:34 (22 July 2009) Genome-wide expression profiling allows the classification of pediatric septic shock into three distinct subclasses, which may enable the design of specific therapies, particularly targeted at the adaptive immune system and zinc homeostasis.
|
|
Research article
Lukas Chavez, Abha S Bais, Martin Vingron, Hans Lehrach, James Adjaye, Ralf Herwig BMC Genomics 2009, 10:314 (15 July 2009) |
|
Research article
John M Taylor, Sofiane Ghorbel, Christophe Nicot BMC Genomics 2009, 10:311 (14 July 2009) |
|
Research article
Amar Drawid, Nupur Gupta, Vijayalakshmi H Nagaraj, Céline Gélinas, Anirvan M Sengupta BMC Bioinformatics 2009, 10:208 (7 July 2009) |
|
Research
Annotating the human genome with Disease Ontology John D Osborne, Jared Flatow, Michelle Holko, Simon M Lin, Warren A Kibbe, Lihua Zhu, Maria I Danila, Gang Feng, Rex L Chisholm BMC Genomics 2009, 10(Suppl 1):S6 (7 July 2009) |
|
Software
Ming Yi, Uma Mudunuri, Anney Che, Robert M Stephens BMC Bioinformatics 2009, 10:200 (29 June 2009) |
|
Research article
Jeff W Chou, Pierre R Bushel BMC Genomics 2009, 10:272 (18 June 2009) |
|
Research
Proteins recruited by SH3 domains of Ruk/CIN85 adaptor identified by LC-MS/MS Serhiy Havrylov, Yuriy Rzhepetskyy, Agata Malinowska, Lyudmyla Drobot, Maria Redowicz Proteome Science 2009, 7:21 (16 June 2009) |
|
Proceedings
Maria G Roubelakis, Pantelis Zotos, Georgios Papachristoudis, Ioannis Michalopoulos, Kalliopi I Pappa, Nicholas P Anagnou, Sophia Kossida BMC Bioinformatics 2009, 10(Suppl 6):S20 (16 June 2009) |
|
Research article
Mutations in many genes affect aggressive behavior in Drosophila melanogaster Alexis C Edwards, Liesbeth Zwarts, Akihiko Yamamoto, Patrick Callaerts, Trudy FC Mackay BMC Biology 2009, 7:29 (11 June 2009) Aggressive behavior in Drosophila melanogaster is a complex trait and 57 genes influencing aggression levels have now been identified in a screen of fly lines carrying P-element insertions.
|
|
Research article
Meng Li, Curt Balch, John S Montgomery, Mikyoung Jeong, Jae Chung, Pearlly Yan, Tim HM Huang, Sun Kim, Kenneth P Nephew BMC Medical Genomics 2009, 2:34 (8 June 2009) |
|
Research
Stefanie Slezak, Ping Jin, Lorraine Caruccio, Jiaqiang Ren, Michael Bennett, Nausheen Zia, Sharon Adams, Ena Wang, Joao Ascensao, Geraldine Schechter, David Stroncek Journal of Translational Medicine 2009, 7:39 (4 June 2009) |
|
Research article
Prediction of HIV-1 virus-host protein interactions using virus and host sequence motifs Perry Evans, William Dampier, Lyle Ungar, Aydin Tozeren BMC Medical Genomics 2009, 2:27 (18 May 2009) |
|
Research article
Tali Eilon, Itamar Barash BMC Genomics 2009, 10:231 (18 May 2009) |
|
Primary research
Sandra Karlsson, Björn Olsson, Karin Klinga-Levan Cancer Cell International 2009, 9:12 (8 May 2009) |
|
Research
Lei-Miao Yin, Gong-Hao Jiang, Yu Wang, Yan Wang, Yan-Yan Liu, Wei-Rong Jin, Yu-Dong Xu, Qing-Hua Zhang, Yong-Qing Yang Journal of Biomedical Science 2009, 16:46 (6 May 2009) |
|
Research
Comprehensive proteomic analysis of human cervical-vaginal fluid using colposcopy samples Geert Zegels, Geert AA Van Raemdonck, Edmond P Coen, Wiebren AA Tjalma, Xaveer WM Van Ostade Proteome Science 2009, 7:17 (17 April 2009) |
|
Research article
Xingyi Hang, Peiyao Li, Zhifeng Li, Wubin Qu, Ying Yu, Hualing Li, Zhiyong Shen, Hao Zheng, Yan Gao, Yonghong Wu, Minghua Deng, Zhixian Sun, Chenggang Zhang BMC Genomics 2009, 10:126 (25 March 2009) |
|
Research
MicroRNA and gene expression patterns in the differentiation of human embryonic stem cells Jiaqiang Ren, Ping Jin, Ena Wang, Francesco M Marincola, David F Stroncek Journal of Translational Medicine 2009, 7:20 (23 March 2009) |
|
Research
Errol M Thomson, Andrew Williams, Carole L Yauk, Renaud Vincent Particle and Fibre Toxicology 2009, 6:6 (11 March 2009) |
|
Research article
Rapid evolution of mammalian X-linked testis microRNAs Xuejiang Guo, Bing Su, Zuomin Zhou, Jiahao Sha BMC Genomics 2009, 10:97 (4 March 2009) |
|
Research article
Somatic, germline and sex hierarchy regulated gene expression during Drosophila metamorphosis Matthew S Lebo, Laura E Sanders, Fengzhu Sun, Michelle N Arbeitman BMC Genomics 2009, 10:80 (13 February 2009) |
|
Research article
Understanding Haemophilus parasuis infection in porcine spleen through a transcriptomics approach Hongbo Chen, Changchun Li, Mingdi Fang, Mengjin Zhu, Xinyun Li, Rui Zhou, Kui Li, Shuhong Zhao BMC Genomics 2009, 10:64 (5 February 2009) |
|
Software
GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists Eran Eden, Roy Navon, Israel Steinfeld, Doron Lipson, Zohar Yakhini BMC Bioinformatics 2009, 10:48 (3 February 2009) |
|
Research article
A Candida albicans early stage biofilm detachment event in rich medium Adnane Sellam, Thamir Al-Niemi, Kathleen McInnerney, Susan Brumfield, Andre Nantel, Peter A Suci BMC Microbiology 2009, 9:25 (2 February 2009) |
|
Software
ArrayIDer: automated structural re-annotation pipeline for DNA microarrays Bart HJ van den Berg, Jay H Konieczka, Fiona M McCarthy, Shane C Burgess BMC Bioinformatics 2009, 10:30 (23 January 2009) |
|
Research article
Farhan Mohammad, Priyanka Singh, Abhay Sharma BMC Systems Biology 2009, 3:11 (21 January 2009) |
|
Research article
Microarray and cDNA sequence analysis of transcription during nerve-dependent limb regeneration James R Monaghan, Leonard G Epp, Srikrishna Putta, Robert B Page, John A Walker, Chris K Beachy, Wei Zhu, Gerald M Pao, Inder M Verma, Tony Hunter, Susan V Bryant, David M Gardiner, Tim T Harkins, S Randal Voss BMC Biology 2009, 7:1 (13 January 2009) Following amputation, transcription is initially similar in innervated and denervated axolotl limbs, but without nerves there is a lack of cell proliferation and protracted wound healing takes place instead of regeneration.
|
|
Research article
Stefano Cagnin, Michele Biscuola, Cristina Patuzzo, Elisabetta Trabetti, Alessandra Pasquali, Paolo Laveder, Giuseppe Faggian, Mauro Iafrancesco, Alessandro Mazzucco, Pier Franco Pignatti, Gerolamo Lanfranchi BMC Genomics 2009, 10:13 (9 January 2009) |
|
Research
Studying alternative splicing regulatory networks through partial correlation analysis Liang Chen, Sika Zheng Genome Biology 2009, 10:R3 (9 January 2009) The identification of links between exons and their regulators or targets and between co-spliced exons in human, mouse and rat provides novel insights into the alternative splicing regulatory network. |
|
Software
ContDist: a tool for the analysis of quantitative gene and promoter properties Michael Hackenberg, Gorka Lasso, Rune Matthiesen BMC Bioinformatics 2009, 10:7 (7 January 2009) |
|
Research article
Hooi-Ming Lee, Toru Mima, Hidehiko Sugino, Chieko Aoki, Yasuo Adachi, Naoko Yoshio-Hoshino, Kenichi Matsubara, Norihiro Nishimoto Arthritis Research & Therapy 2009, 11:R1 (3 January 2009) |
|
Software
WGCNA: an R package for weighted correlation network analysis Peter Langfelder, Steve Horvath BMC Bioinformatics 2008, 9:559 (29 December 2008) |
|
Research article
Monocytes of patients with familial hypercholesterolemia show alterations in cholesterol metabolism Sandy Mosig, Knut Rennert, Petra Büttner, Siegfried Krause, Dieter Lütjohann, Muhidien Soufi, Regine Heller, Harald Funke BMC Medical Genomics 2008, 1:60 (28 November 2008) |
|
Research article
Joshua A Harrill, Zhen Li, Fred A Wright, Nicholas M Radio, William R Mundy, Rogelio Tornero-Velez, Kevin M Crofton BMC Genomics 2008, 9:546 (18 November 2008) |
|
Short Report
Patricia Severino, Adriana M Alvares, Pedro Michaluart, Oswaldo K Okamoto, Fabio D Nunes, Carlos A Moreira-Filho, Eloiza H Tajara, BMC Research Notes 2008, 1:113 (13 November 2008) |
|
Research article
Putative psychosis genes in the prefrontal cortex: combined analysis of gene expression microarrays Kwang Choi, Michael Elashoff, Brandon W Higgs, Jonathan Song, Sanghyeon Kim, Sarven Sabunciyan, Suad Diglisic, Robert H Yolken, Michael B Knable, E Fuller Torrey, Maree J Webster BMC Psychiatry 2008, 8:87 (7 November 2008) |
|
Research article
Hsin-I Chiang, Christina L Swaggerty, Michael H Kogut, Scot E Dowd, Xianyao Li, Igal Y Pevzner, Huaijun Zhou BMC Genomics 2008, 9:526 (6 November 2008) |
|
Method
Boolean implication networks derived from large scale, whole genome microarray datasets Debashis Sahoo, David L Dill, Andrew J Gentles, Robert Tibshirani, Sylvia K Plevritis Genome Biology 2008, 9:R157 (30 October 2008) A method for analysis of microarray data is presented that extracts statistically significant Boolean implication relationships between pairs of genes. |
|
Research article
Transcriptional response of Mexican axolotls to Ambystoma tigrinum virus (ATV) infection Jennifer D Cotter, Andrew Storfer, Robert B Page, Christopher K Beachy, S Randal Voss BMC Genomics 2008, 9:493 (20 October 2008) |
|
Research article
Willeke MC van Roon-Mom, Barry A Pepers, Peter AC 't Hoen, Carola ACM Verwijmeren, Johan T den Dunnen, Josephine C Dorsman, GertJan B van Ommen BMC Molecular Biology 2008, 9:84 (9 October 2008) |
|
Research
Monika Ray, Jianhua Ruan, Weixiong Zhang Genome Biology 2008, 9:R148 (8 October 2008) Analysis of microarray data reveals extensive links between Alzheimer’s disease and cardiovascular diseases. |
|
Research article
Maternal Oct-4 is a potential key regulator of the developmental competence of mouse oocytes Maurizio Zuccotti, Valeria Merico, Lucia Sacchi, Michele Bellone, Thore C Brink, Riccardo Bellazzi, Mario Stefanelli, Carlo Redi, Silvia Garagna, James Adjaye BMC Developmental Biology 2008, 8:97 (6 October 2008) |
|
Research article
Chris Cheadle, Maria Nesterova, Tonya Watkins, Kathleen C Barnes, John C Hall, Antony Rosen, Kevin G Becker, Yoon S Cho-Chung BMC Medical Genomics 2008, 1:43 (26 September 2008) Overexpression of the regulatory subunit of cAMP-dependent protein kinase (PKA) in ovarian cancer cells causes hyperproliferation for the RI isoform and differentiation for RII, suggesting that PKA may be pivotal in disease progression.
|
|
Software
Presenting and exploring biological pathways with PathVisio Martijn P van Iersel, Thomas Kelder, Alexander R Pico, Kristina Hanspers, Susan Coort, Bruce R Conklin, Chris Evelo BMC Bioinformatics 2008, 9:399 (25 September 2008) |
|
Research article
Tali Eilon, Itamar Barash BMC Cancer 2008, 8:270 (24 September 2008) |
|
Method
Sami Kilpinen, Reija Autio, Kalle Ojala, Kristiina Iljin, Elmar Bucher, Henri Sara, Tommi Pisto, Matti Saarela, Rolf I Skotheim, Mari Björkman, John-Patrick Mpindi, Saija Haapa-Paananen, Paula Vainio, Henrik Edgren, Maija Wolf, Jaakko Astola, Matthias Nees, Sampsa Hautaniemi, Olli Kallioniemi Genome Biology 2008, 9:R139 (19 September 2008) A method for the comparison of mRNA expression levels of most human genes across gene expression array experiments, and a database of the results, are presented. |
|
Database
SQUAT: A web tool to mine human, murine and avian SAGE data Johan Leyritz, Stéphane Schicklin, Sylvain Blachon, Céline Keime, Céline Robardet, Jean-François Boulicaut, Jérémy Besson, Ruggero G Pensa, Olivier Gandrillon BMC Bioinformatics 2008, 9:378 (18 September 2008) |
|
Methodology article
Stefano Moretti, Danitsja van Leeuwen, Hans Gmuender, Stefano Bonassi, Joost van Delft, Jos Kleinjans, Fioravante Patrone, Domenico Merlo BMC Bioinformatics 2008, 9:361 (2 September 2008) |
|
Proceedings
Mikhail G Dozmorov, Kimberly D Kyker, Paul J Hauser, Ricardo Saban, David D Buethe, Igor Dozmorov, Michael B Centola, Daniel J Culkin, Robert E Hurst BMC Bioinformatics 2008, 9(Suppl 9):S4 (12 August 2008) |
|
Research article
Wei Jiang, Xia Li, Shaoqi Rao, Lihong Wang, Lei Du, Chuanxing Li, Chao Wu, Hongzhi Wang, Yadong Wang, Baofeng Yang BMC Systems Biology 2008, 2:72 (10 August 2008) |
|
Research
Richard C McEachin, Benjamin J Keller, Erika FH Saunders, Melvin G McInnis BioData Mining 2008, 1:2 (17 July 2008) |
|
Research article
Christina Yau, Christopher C Benz Breast Cancer Research 2008, 10:R61 (17 July 2008) An investigation into the effect of oxidative stress on estrogen and estrogen receptor-regulated gene expression identified a subset of oxidant-sensitive genes associated with poor prognosis in ER+ primary breast cancer.
|
|
Research article
Kurtis Eisermann, Sunpreet Tandon, Anton Bazarov, Adina Brett, Gail Fraizer, Helen Piontkivska BMC Genomics 2008, 9:337 (16 July 2008) |
|
Research article
Xia Chen, Shuang Liang, WenLing Zheng, ZhiJun Liao, Tao Shang, WenLi Ma BMC Genomics 2008, 9:322 (7 July 2008) |
|
Research article
Masato Yoneda, Kikuko Hotta, Yuichi Nozaki, Hiroki Endo, Takashi Uchiyama, Hironori Mawatari, Hiroshi Iida, Shingo Kato, Kunihiro Hosono, Koji Fujita, Kyoko Yoneda, Hirokazu Takahashi, Hiroyuki Kirikoshi, Noritoshi Kobayashi, Masahiko Inamori, Yasunobu Abe, Kensuke Kubota, Satoru Saito, Shiro Maeyama, Koichiro Wada, Atsushi Nakajima BMC Gastroenterology 2008, 8:27 (27 June 2008) |
|
Methodology article
Rob Jelier, Peter AC 't Hoen, Ellen Sterrenburg, Johan T den Dunnen, Gert-Jan B van Ommen, Jan A Kors, Barend Mons BMC Bioinformatics 2008, 9:291 (24 June 2008) |
|
Methodology article
Florent Baty, Daniel Jaeger, Frank Preiswerk, Martin M Schumacher, Martin H Brutsche BMC Bioinformatics 2008, 9:289 (20 June 2008) |
|
Research article
Michael J Boedigheimer, Russell D Wolfinger, Michael B Bass, Pierre R Bushel, Jeff W Chou, Matthew Cooper, J Christopher Corton, Jennifer Fostel, Susan Hester, Janice S Lee, Fenglong Liu, Jie Liu, Hui-Rong Qian, John Quackenbush, Syril Pettit, Karol L Thompson BMC Genomics 2008, 9:285 (12 June 2008) An inter-laboratory meta-analysis of more than 500 microarrays from the liver and kidney of control rats defined key sources of variability in control animals and will aid in the efficient design of future toxicogenomics experiments.
|
|
Research
Bent Honoré, Søren Buus, Mogens H Claësson Proteome Science 2008, 6:18 (10 June 2008) |
|
Research article
Functional characterization of endogenous siRNA target genes in Caenorhabditis elegans Suvi Asikainen, Liisa Heikkinen, Garry Wong, Markus Storvik BMC Genomics 2008, 9:270 (3 June 2008) |
|
Research article
Jacob G Bundy, Jasmin K Sidhu, Faisal Rana, David J Spurgeon, Claus Svendsen, Jodie F Wren, Stephen R Stürzenbaum, A John Morgan, Peter Kille BMC Biology 2008, 6:25 (3 June 2008) The toxic effects of chemical contaminants like copper on a key indicator organism, the earthworm, can be monitored by combining metabolomics and transcriptomics, a systems ecotoxicology approach that provides detailed molecular information about adaptation to soil pollutants.
|
|
Research
Wing-Cheong Wong, Marie Loh, Frank Eisenhaber Biology Direct 2008, 3:23 (3 June 2008) |
|
Research article
Hector R Wong, Kelli Odoms, Bhuvaneswari Sakthivel BMC Immunology 2008, 9:24 (30 May 2008) |
|
Research
Improving the power for detecting overlapping genes from multiple DNA microarray-derived gene lists Xutao Deng, Jun Xu, Charles Wang BMC Bioinformatics 2008, 9(Suppl 6):S14 (28 May 2008) |
|
Research article
Genomic analysis of post-mating changes in the honey bee queen (Apis mellifera) Sarah D Kocher, Freddie-Jeanne Richard, David R Tarpy, Christina M Grozinger BMC Genomics 2008, 9:232 (19 May 2008) |
|
Research article
Michael D George, Jan Wehkamp, Robert J Kays, Christian M Leutenegger, Sadiah Sabir, Irina Grishina, Satya Dandekar, Charles L Bevins BMC Genomics 2008, 9:209 (5 May 2008) |
|
Research article
Palaniappan Ramanathan, Ian C Martin, Margaret Gardiner-Garden, Peter C Thomson, Rosanne M Taylor, Christopher J Ormandy, Christopher Moran, Peter Williamson BMC Genomics 2008, 9:197 (29 April 2008) |
|
Research
Efthimia Karantzali, Herbert Schulz, Oliver Hummel, Norbert Hubner, AK Hatzopoulos, Androniki Kretsovali Genome Biology 2008, 9:R65 (4 April 2008) A gene profiling study of mouse embryonic stem cells treated with the histone deacetylase inhibitor trichostatin A shows that inhibition of histone deacetylases accelerates the early events of differentiation, by regulating the expression of pluripotency- and differentiation-associated in an opposite manner. |
|
Research
A sequence-based survey of the complex structural organization of tumor genomes Benjamin J Raphael, Stanislav Volik, Peng Yu, Chunxiao Wu, Guiqing Huang, Elena V Linardopoulou, Barbara J Trask, Frederic Waldman, Joseph Costello, Kenneth J Pienta, Gordon B Mills, Krystyna Bajsarowicz, Yasuko Kobayashi, Shivaranjani Sridharan, Pamela L Paris, Quanzhou Tao, Sarah J Aerni, Raymond P Brown, Ali Bashir, Joe W Gray, Jan-Fang Cheng, Pieter de Jong, Mikhail Nefedov, Thomas Ried, Hesed M Padilla-Nash, Colin C Collins Genome Biology 2008, 9:R59 (25 March 2008) Tumors and cancer cell lines were surveyed with end-sequencing profiling, yielding the largest available collection of sequence-ready tumor genome breakpoints and providing evidence that some rearrangements may be recurrent. |
|
Database
MADIBA: A web server toolkit for biological interpretation of Plasmodium and plant gene clusters Philip J Law, Clotilde Claudel-Renard, Fourie Joubert, Abraham I Louw, Dave K Berger BMC Genomics 2008, 9:105 (28 February 2008) |
|
Research article
Merging microarray data from separate breast cancer studies provides a robust prognostic test Lei Xu, Aik Tan, Raimond L Winslow, Donald Geman BMC Bioinformatics 2008, 9:125 (27 February 2008) |
|
Methodology article
Simple integrative preprocessing preserves what is shared in data sources Abhishek Tripathi, Arto Klami, Samuel Kaski BMC Bioinformatics 2008, 9:111 (21 February 2008) |
|
Research article
Robert B Page, Stephen R Voss, Amy K Samuels, Jeramiah J Smith, Srikrishna Putta, Christopher K Beachy BMC Genomics 2008, 9:78 (11 February 2008) |
|
Research article
Markus Thiersch, Wolfgang Raffelsberger, Rico Frigg, Marijana Samardzija, Andreas Wenzel, Olivier Poch, Christian Grimm BMC Genomics 2008, 9:73 (8 February 2008) |
|
Research article
Characterization of a newly developed chicken 44K Agilent microarray Xianyao Li, Hsin-I Chiang, James Zhu, Scot E Dowd, Huaijun Zhou BMC Genomics 2008, 9:60 (31 January 2008) |
|
Research article
David D Smith, Pål Sætrom, Ola Snøve, Cathryn Lundberg, Guillermo E Rivas, Carlotta Glackin, Garrett P Larson BMC Bioinformatics 2008, 9:63 (28 January 2008) |
|
Research
Scott H Robbins, Thierry Walzer, Doulaye Dembélé, Christelle Thibault, Axel Defays, Gilles Bessou, Huichun Xu, Eric Vivier, MacLean Sellars, Philippe Pierre, Franck R Sharp, Susan Chan, Philippe Kastner, Marc Dalod Genome Biology 2008, 9:R17 (24 January 2008) Genome-wide expression profiling of mouse and human leukocytes reveal conserved transcriptional programs of plasmacytoid or conventional dendritic cell subsets. |
|
Research article
Coordinated evolution of co-expressed gene clusters in the Drosophila transcriptome Jason G Mezey, Sergey V Nuzhdin, Fangfei Ye, Corbin D Jones BMC Evolutionary Biology 2008, 8:2 (7 January 2008) |
|
Method
Broad network-based predictability of Saccharomyces cerevisiae gene loss-of-function phenotypes Kriston L McGary, Insuk Lee, Edward M Marcotte Genome Biology 2007, 8:R258 (5 December 2007) Loss-of-function phenotypes of yeast genes can be predicted from the loss-of-function phenotypes of their neighbours in functional gene networks. This could potentially be applied to the prediction of human disease genes. |
|
Method
Prediction of synergistic transcription factors by function conservation Zihua Hu, Boyu Hu, James F Collins Genome Biology 2007, 8:R257 (5 December 2007) A new strategy is proposed for identifying synergistic transcription factors by function conservation, leading to the identification of 51 homotypic transcription-factor combinations. |
|
Research
Shuzhang Yang, Kai Wang, Otto Valladares, Sridhar Hannenhalli, Maja Bucan Genome Biology 2007, 8:R247 (20 November 2007) Microarray analysis shows that approximately 10% of transcripts in the mouse prefrontal cortex have diurnally regulated expression patterns. |
|
Software
J Christopher Bare, Paul T Shannon, Amy K Schmid, Nitin S Baliga BMC Bioinformatics 2007, 8:456 (19 November 2007) |
|
Research article
Sanghyeon Kim, Kwang-Ho Choi, Ali Baykiz, Howard K Gershenfeld BMC Genomics 2007, 8:413 (12 November 2007) |
|
Database
Brad T Sherman, Da Huang, Qina Tan, Yongjian Guo, Stephan Bour, David Liu, Robert Stephens, Michael W Baseler, H Clifford Lane, Richard A Lempicki BMC Bioinformatics 2007, 8:426 (2 November 2007) |
|
Research article
Large-scale analysis by SAGE reveals new mechanisms of v-erbA oncogene action Corinne Bresson, Celine Keime, Claudine Faure, Yann Letrillard, Maud Barbado, Sandra Sanfilippo, Najate Benhra, Olivier Gandrillon, Sandrine Gonin-Giraud BMC Genomics 2007, 8:390 (26 October 2007) |
|
Methodology article
Computational selection and prioritization of candidate genes for Fetal Alcohol Syndrome Zané Lombard, Nicki Tiffin, Oliver Hofmann, Vladimir B Bajic, Winston Hide, Michèle Ramsay BMC Genomics 2007, 8:389 (25 October 2007) |
|
Software
BMDExpress: a software tool for the benchmark dose analyses of genomic data Longlong Yang, Bruce C Allen, Russell S Thomas BMC Genomics 2007, 8:387 (25 October 2007) |
|
Method
Simplified ontologies allowing comparison of developmental mammalian gene expression Adele Kruger, Oliver Hofmann, Piero Carninci, Yoshihide Hayashizaki, Winston Hide Genome Biology 2007, 8:R229 (25 October 2007) The Developmental eVOC ontologies presented are simplified orthogonal ontologies describing the temporal and spatial distribution of developmental human and mouse anatomy. |
|
Research
Hélène Coppin, Valérie Darnaud, Léon Kautz, Delphine Meynard, Marc Aubry, Jean Mosser, Maria Martinez, Marie-Paule Roth Genome Biology 2007, 8:R221 (18 October 2007) Gene expression profiling using microarrays of Hfe-/- liver and duodenum in mouse strains with differing susceptibilities to iron loading allowed the identification of transcriptional targets of the hemochromatosis-associated gene Hfe.
|
|
Research article
Improved human disease candidate gene prioritization using mouse phenotype Jing Chen, Huan Xu, Bruce J Aronow, Anil G Jegga BMC Bioinformatics 2007, 8:392 (16 October 2007) |
|
Research article
Characterization of oligopeptide patterns in large protein sets Anders Bresell, Bengt Persson BMC Genomics 2007, 8:346 (1 October 2007) |
|
Methodology article
Linking microarray reporters with protein functions Stan Gaj, Arie van Erk, Rachel IM van Haaften, Chris TA Evelo BMC Bioinformatics 2007, 8:360 (26 September 2007) |
|
Research article
Zhe Zhang, Dechang Chen, David A Fenstermacher BMC Genomics 2007, 8:331 (20 September 2007) |
|
Brief reports
Guozhen Liu, Monica Uddin, Munirul Islam, Morris Goodman, Lawrence I Grossman, Roberto Romero, Derek E Wildman Source Code for Biology and Medicine 2007, 2:5 (18 September 2007) |
|
Research article
Karol L Thompson, P Scott Pine, Barry A Rosenzweig, Yaron Turpaz, Jacques Retief BMC Biotechnology 2007, 7:57 (13 September 2007) |
|
Methodology article
EDISA: extracting biclusters from multiple time-series of gene expression profiles Jochen Supper, Martin Strauch, Dierk Wanke, Klaus Harter, Andreas Zell BMC Bioinformatics 2007, 8:334 (12 September 2007) |
|
Primary research
Khaldoun Al-Romaih, Gino R Somers, Jane Bayani, Simon Hughes, Mona Prasad, Jean-Claude Cutz, Hui Xue, Maria Zielenska, Yuzhuo Wang, Jeremy A Squire Cancer Cell International 2007, 7:14 (10 September 2007) |
|
Software
Da Huang, Brad T Sherman, Qina Tan, Jack R Collins, W Gregory Alvord, Jean Roayaei, Robert Stephens, Michael W Baseler, H Clifford Lane, Richard A Lempicki Genome Biology 2007, 8:R183 (4 September 2007) The DAVID gene functional classification tool uses a novel fuzzy clustering algorithm to condense a list of genes or associated biological terms into organized classes of related genes or biology, called biological modules. |
|
Research
Lawrence S Hon, Zemin Zhang Genome Biology 2007, 8:R166 (14 August 2007) A genome wide analysis of factors affecting repression of mRNAs by microRNAs reveals roles for 3'UTR length, the number of target sites on the mRNA and the distance between pairs of binding sites. |
|
Methodology article
Randall Hulshizer, Eric M Blalock BMC Bioinformatics 2007, 8:240 (5 July 2007) |
|
Research
Morphine effects on striatal transcriptome in mice Michal Korostynski, Marcin Piechota, Dorota Kaminska, Wojciech Solecki, Ryszard Przewlocki Genome Biology 2007, 8:R128 (28 June 2007) Global transcriptional analysis of mouse striata following acute and chronic exposure to morphine reveals multiple physiological factors which may affect opioid-related phenotypes and implicates a number of gene networks, including glucocorticoid receptor regulated genes, in the response to this opioid. |
|
Primary research
Common molecular pathways involved in human CD133+/CD34+ progenitor cell expansion and cancer Oswaldo Okamoto, Ana Carolina SR Carvalho, Luciana C Marti, Ricardo Z Vêncio, Carlos A Moreira-Filho Cancer Cell International 2007, 7:11 (8 June 2007) |
|
Research
A functional map of NFκB signaling identifies novel modulators and multiple system controls Thomas A Halsey, Longlong Yang, John R Walker, John B Hogenesch, Russell S Thomas Genome Biology 2007, 8:R104 (6 June 2007) Using cell-based genomic screens and functional assays, positive and negative modulators of NFκB signaling were identified and mapped onto the known NFκB signaling cascade. |
|
Research article
Understanding network concepts in modules Jun Dong, Steve Horvath BMC Systems Biology 2007, 1:24 (4 June 2007) |
|
Software
Markus Weniger, Julia C Engelmann, Jörg Schultz BMC Bioinformatics 2007, 8:179 (2 June 2007) |
|
Research article
Boris Greber, Hans Lehrach, James Adjaye BMC Developmental Biology 2007, 7:46 (16 May 2007) |
|
Method
Yingchun Liu, Markus Ringnér Genome Biology 2007, 8:R77 (11 May 2007) A strategy for identifying cell signaling pathways whose deregulation result in an observed expression signature is presented. |
|
Research
Jennifer L Ingram, Aurita Antao-Menezes, Elizabeth A Turpin, Duncan G Wallace, James B Mangum, Linda J Pluta, Russell S Thomas, James C Bonner Respiratory Research 2007, 8:34 (25 April 2007) |
|
Research article
Prathibha Ranganathan, Animesh Agrawal, Raghu Bhushan, Aravinda K Chavalmane, Ravi Kalathur, Takashi Takahashi, Paturu Kondaiah BMC Genomics 2007, 8:98 (11 April 2007) |
|
Research
Global transcriptome analysis of murine embryonic stem cell-derived cardiomyocytes Michael Doss, Johannes Winkler, Shuhua Chen, Rita Hippler-Altenburg, Isaia Sotiriadou, Marcel Halbach, Kurt Pfannkuche, Huamin Liang, Herbert Schulz, Oliver Hummel, Norbert Hübner, Ruth Rottscheidt, Jürgen Hescheler, Agapios Sachinidis Genome Biology 2007, 8:R56 (11 April 2007) |