Table 3

Reference mitochondrial control-region sequences obtained from EMBL database and used in the phylogenetic analysis
Sample Code	Species	Subspecies	Country/Conttinent		EMBL AccNo	D-loop (bp)	Haplotype^a	Reference	D-loop region sequenced

1-lu1	*C. lupus*	lupus	Yugosolavia	Europe	AB007372	672		[9]	Complete 5'-CR-I
2-lu2	*C. lupus*	lupus	Yugosolavia	Europe	AB007373	672		[9]	Complete 5'-CR-I
3-p1	*C. lupus*	pallipes	Afganisathan	Asia	AB007374	672		[9]	Complete 5'-CR-I
4-ch1	*C. lupus*	chanco	Mongol, China	Asia	AB007375	673		[9]	Complete 5'-CR-I
5-ch2	*C. lupus*	chanco	Mongol, China	Asia	AB007376	673		[9]	Complete 5'-CR-I
6-ch3	*C. lupus*	chanco	Mongol, China	Asia	AB007377	673		[9]	Complete 5'-CR-I
7-ch4	*C. lupus*	chanco	Mongol, China	Asia	AB007378	673		[9]	Complete 5'-CR-I
8-ch5	*C. lupus*	chanco	Mongol, China	Asia	AB007379	673		[9]	Complete 5'-CR-I
9-Wo11	*C. lupus*	crassodon	Canada	N. America	AF098125	707	Wo-11	[45]*	Complete 5'-CR-I
10-Wo10	*C. lupus*	crassodon	Canada	N. America	AF098124	707	Wo-10	[45]*	Complete 5'-CR-I
11-Wo9	*C. lupus*	crassodon	Canada	N. America	AF098123	707	Wo-9	[45]*	Complete 5'-CR-I
12-Wo4	*C. lupus*	columbianus	Canada	N. America	AF098118	707	Wo-4	[45]*	Complete 5'-CR-I
13-Wo5	*C. lupus*	columbianus	Canada	N. America	AF098119	707	Wo-5	[45]*	Complete 5'-CR-I
14-Wo6	*C. lupus*	columbianus	Canada	N. America	AF098120	707	Wo-6	[45]*	Complete 5'-CR-I
15-Wo7	*C. lupus*	columbianus	Canada	N. America	AF098121	707	Wo-7	[45]*	Complete 5'-CR-I
16-Wo8	*C. lupus*	columbianus	Canada	N. America	AF098122	707	Wo-8	[45]*	Complete 5'-CR-I
17-Wo2	*C. lupus*	lupus	Canada	N. America	AF098116	707	Wo-2	[45]*	Complete 5'-CR-I
18-Wo3	*C. lupus*	lupus	Canada	N. America	AF098117	707	Wo-3	[45]*	Complete 5'-CR-I
19-Wo1	*C. lupus*	tundrarum	Canada	N. America	AF098115	707	Wo-1	[45]*	Complete 5'-CR-I
20-W27	*C. lupus*		China	Asia	AF008135	713	W-27	[18]	Complete 5'-CR-I
21-W 6	*C. lupus*		Romania	Europe	AF008136	712	W-6	[18]	Complete 5'-CR-I
22-W 1	*C. lupus*		Spain	Europe	AF008137	712	W-1	[18]	Complete 5'-CR-I
23-W 4	*C. lupus*		France/Italy	Europe	AF008138	712	W-4	[18]	Complete 5'-CR-I
24-W 5	*C. lupus*		Greece/Romania	Europe	AF008139	712	W-5	[18]	Complete 5'-CR-I
25-W12	*C. lupus*		India	Asia	AF008140	712	W-12	[18]	Complete 5'-CR-I
26-W15	*C. lupus*		SaudiArabia	Asia	AF008141	713	W-15	[18]	Complete 5'-CR-I
27-W14	*C. lupus*		SaudiArabia/China	Asia	AF008142	712	W-14	[18]	Complete 5'-CR-I
28-w 1	*C. lupus*		Italy-East European	Europe	AF115687	542	w-1	[42]	Most of 5'-CR-I
29-w 2	*C. lupus*		Italy-East European	Europe	AF115688	542	w-2	[42]	Most of 5'-CR-I
30-w 3	*C. lupus*		Italy-East European	Europe	AF115689	542	w-3	[42]	Most of 5'-CR-I
31-w 4	*C. lupus*		Italy-East European	Europe	AF115690	542	w-4	[42]	Most of 5'-CR-I
32-w 5	*C. lupus*		Italy-East European	Europe	AF115691	542	w-5	[42]	Most of 5'-CR-I
33-w 7	*C. lupus*		Italy-East European	Europe	AF115692	542	w-7	[42]	Most of 5'-CR-I
34-w 8	*C. lupus*		Italy-East European	Europe	AF115693	542	w-8	[42]	Most of 5'-CR-I
35-w 9	*C. lupus*		Italy-East European	Europe	AF115694	542	w-9	[42]	Most of 5'-CR-I
36-w 10	*C. lupus*		Italy-East European	Europe	AF115695	542	w-10	[42]	Most of 5'-CR-I
37-w 11	*C. lupus*		Italy-East European	Europe	AF115696	542	w-11	[42]	Most of 5'-CR-I
38-w 12	*C. lupus*		Italy-East European	Europe	AF115697	542	w-12	[42]	Most of 5'-CR-I
39-w 13	*C. lupus*		Italy-East European	Europe	AF115698	542	w-13	[42]	Most of 5'-CR-I
40-w 14	*C. lupus*		Italy-East European	Europe	AF115699	542	w-14	[42]	Most of 5'-CR-I
41-w 15	*C. lupus*		Italy-East European	Europe	AF115700	542	w-15	[42]	Most of 5'-CR-I
42-w 16	*C. lupus*		Italy-East European	Europe	AF115701	542	w-16	[42]	Most of 5'-CR-I
43-w 19	*C. lupus*		Italy-East European	Europe	AF115702	542	w-19	[42]	Most of 5'-CR-I
44-w 20	*C. lupus*		Italy-East European	Europe	AF115703	542	w-20	[42]	Most of 5'-CR-I
45-Do9	*C. familiaris*		Dog			707	Do-9		Complete 5'-CR-I
46-DogABO	*C. familiaris*		Dog		AB048590	737			Complete 5'-CR-I
47	*ulpus vulpus*		Red fox	Japan	D-83639	666		[43]	Complete 5'-CR-I
48	*procyonoides*		Raccoon dog	Japan	D-83614	667		[43]	Complete 5'-CR-I
49-W1	*C. lupus*		France/Italy/Spain	Europe	AF338803	342	W-1	[46]*	Part of 5'-CR-I
50-W2	*C. lupus*		France/Italy/Spain	Europe	AF338804	342	W-2	[46]*	Part of 5'-CR-I
51-W3	*C. lupus*		France/Italy/Spain	Europe	AF338805	342	W-3	[46]*	Part of 5'-CR-I
52-W4	*C. lupus*		Croatia	Europe	AF338806	342	W-4	[46]*	Part of 5'-CR-I
53-W5	*C. lupus*		Croatia	Europe	AF338807	342	W-5	[46]*	Part of 5'-CR-I
54-W6	*C. lupus*		Portugal	Europe	AF338808	342	W-6	[46]*	Part of 5'-CR-I
55-W7	*C. lupus*		Spain	Europe	AF338809	342	W-7	[46]*	Part of 5'-CR-I
56-W8	*C. lupus*		Romania	Europe	AF338810	342	W-8	[46]*	Part of 5'-CR-I
57-W9	*C. lupus*		Poland	Europe	AF338811	342	W-9	[46]*	Part of 5'-CR-I
58-W10	*C. lupus*		Spain	Europe	AF338812	342	W-10	[46]*	Part of 5'-CR-I
59-W2	*C. lupus*		Polland-Belarus	Europe	AF344300	257	W-2	[47]*	Part of 5'-CR-I
60-W3	*C. lupus*		Polland-Belarus	Europe	AF344301	257	W-3	[47]*	Part of 5'-CR-I
61-W4	*C. lupus*		Polland-Belarus	Europe	AF344302	257	W-4	[47]*	Part of 5'-CR-I
62-p3	*C. lupus*		USA	N. America	AF020699	402		[44]	Part of 5'-CR-I
63-W27	*C. lupus*		China	Asia	AF008160	305	W-27	[18]	3'-CR-II
64-W6a	*C. lupus*		Romania/Russia	Eurasia	AF008161	304	W-6a	[18]	3'-CR-II
65-W 1	*C. lupus*		Portugal/Spain	Europe	AF008162	304	W-1	[18]	3'-CR-II
66-W 4	*C. lupus*		France/Italy	Europe	AF008163	300	W-4	[18]	3'-CR-II
67-W 5	*C. lupus*		Greece/Romania	Europe	AF008164	272	W-5	[18]	3'-CR-II
68-W12	*C. lupus*		India	Asia	AF008165	304	W-12	[18]	3'-CR-II
69-W15	*C. lupus*		SausiArabia	Asia	AF008166	304	W-15	[18]	3'-CR-II
70-W14	*C. lupus*		SausiArabia/China	Asia	AF008167	304	W-14	[18]	3'-CR-II
71-w2	*C. lupus*		Croatia/Portugal/Swede	Europe	AF005296	257	w-2	[18]	Part of 5'-CR-I
72-w3	*C. lupus*		Poland/Spain	Europe	AF005297	257	w-3	[18]	Part of 5'-CR-I
73-w7	*C. lupus*		Bulgaria/SaudiArabia	Eurasia	AF005298	257	w-7	[18]	Part of 5'-CR-I
74-w8	*C. lupus*		Greece	Europe	AF005299	257	w-8	[18]	Part of 5'-CR-I
75-w9	*C. lupus*		Greece	Europe	AF005300	257	w-9	[18]	Part of 5'-CR-I
76-w10	*C. lupus*		Estonia/Finland/Russia/Spain		AF005301	257	w-10	[18]	Part of 5'-CR-I
77-w11	*C. lupus*		Israel	Asia	AF005302	257	w-11	[18]	Part of 5'-CR-I
78-w16	*C. lupus*		Iran	Asia	AF005303	257	w-16	[18]	Part of 5'-CR-I
79-w17	*C. lupus*		Iran	Asia	AF005304	257	w-17	[18]	Part of 5'-CR-I
80-w13	*C. lupus*		SaudiArabia	Asia	AF005305	257	w-13	[18]	Part of 5'-CR-I
81-w18	*C. lupus*		Afganisathan	Asia	AF005306	257	w-18	[18]	Part of 5'-CR-I
82-w19	*C. lupus*		China	Asia	AF005307	257	w-19	[18]	Part of 5'-CR-I
83-w20	*C. lupus*		Alaska	N. America	AF005308	257	w-20	[18]	Part of 5'-CR-I
84-w22	*C. lupus*		Alaska/Alberta/Montana/N-W territories		AF005309	257	w-22	[18]	Part of 5'-CR-I
85-w21	*C. lupus*		Yukon	Europe	AF005310	258	w-21	[18]	Part of 5'-CR-I
86-w23	*C. lupus*		Yukon	Europe	AF005311	258	w-23	[18]	Part of 5'-CR-I
87-w24	*C. lupus*		Yukon	Europe	AF005312	258	w-24	[18]	Part of 5'-CR-I
88-w25	*C. lupus*		Mexico	N. America	AF005313	258	w-25	[18]	Part of 5'-CR-I
89-w26	*C. lupus*		Russia	Eurasia	AF005314	257	w-26	[18]	Part of 5'-CR-I
90-lu3	*C. lupus*		Russia	Eurasia	AF202894	360		[48]*	Repetitive region

a : Haplotype code given in the reference by the respective authors * : Unpublished reference; details taken from corresponding EMBL entries
Aggarwal et al. Genome Biology 2003 4:P6 doi:10.1186/gb-2003-4-6-p6