Genome Biology

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The mosaic structure of the symbiotic plasmid of Rhizobium etli CFN42 and its relation to other symbiotic genome compartments

Víctor González, Patricia Bustos, Miguel A Ramírez-Romero, Arturo Medrano-Soto, Heladia Salgado, Ismael Hernández-González, Juan C Hernández-Celis, Verónica Quintero, Gabriel Moreno-Hagelsieb, Lourdes Girard, Oscar Rodríguez, Margarita Flores, Miguel A Cevallos, Julio Collado-Vides, David Romero and Guillermo Dávila*

Genome Biology 2003, 4:R36 doi:10.1186/gb-2003-4-6-r36

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Research article   Open Access

Genomic lineages of Rhizobium etli revealed by the extent of nucleotide polymorphisms and low recombination

José L Acosta, Luis E Eguiarte, Rosa I Santamaría, Patricia Bustos, Pablo Vinuesa, Esperanza Martínez-Romero, Guillermo Dávila, Víctor González BMC Evolutionary Biology 2011, 11:305 (17 October 2011)

Research article   Open Access

The conjugative plasmid of a bean-nodulating Sinorhizobium fredii strain is assembled from sequences of two Rhizobium plasmids and the chromosome of a Sinorhizobium strain

Laura Cervantes, Patricia Bustos, Lourdes Girard, Rosa Santamaría, Guillermo Dávila, Pablo Vinuesa, David Romero, Susana Brom BMC Microbiology 2011, 11:149 (25 June 2011)

Research article   Open Access Highly Accessed

Comparative genome analysis and genome-guided physiological analysis of Roseobacter litoralis

Daniela Kalhoefer, Sebastian Thole, Sonja Voget, Rüdiger Lehmann, Heiko Liesegang, Antje Wollher, Rolf Daniel, Meinhard Simon, Thorsten Brinkhoff BMC Genomics 2011, 12:324 (21 June 2011)

Research article   Open Access

Genomic and evolutionary comparisons of diazotrophic and pathogenic bacteria of the order Rhizobiales

Fabíola M Carvalho, Rangel C Souza, Fernando G Barcellos, Mariangela Hungria, Ana Vasconcelos BMC Microbiology 2010, 10:37 (8 February 2010)

Software   Open Access

Deduction of probable events of lateral gene transfer through comparison of phylogenetic trees by recursive consolidation and rearrangement

Dave MacLeod, Robert L Charlebois, Ford Doolittle, Eric Bapteste BMC Evolutionary Biology 2005, 5:27 (8 April 2005)

Two programs, which extract evidence for vertical and lateral inheritance from a set of gene trees relative to a reference tree, enable individual nodes to be examined for congruence or coherence in light of lateral gene transfer and facilitate the comparison of phylogenetic trees and the interpretation of conflicting data.