Research
Horizontally transferred genes in plant-parasitic nematodes: a high-throughput genomic approach
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* Corresponding author: David Mck Bird david_bird@ncsu.edu
1 Center for the Biology of Nematode Parasitism, Box 7253, North Carolina State University, Raleigh, NC 27695, USA
2 Bioinformatics Research Center, Box 7566, North Carolina State University, Raleigh, NC 27695, USA
3 Genome Sequencing Center, Department of Genetics, Box 8501, Washington University School of Medicine, St. Louis, MO 63108, USA
4 Divergence Inc., 893 North Warson Road, St. Louis, MO 63141, USA
Genome Biology 2003, 4:R39 doi:10.1186/gb-2003-4-6-r39
Published: 19 May 2003Additional files
Additional data file 1:
The e-values of the best matches for the initial BLASTX searches against bacteria, C. elegans and Drosophila for the WMi dataset
Format: TAB Size: 22KB Download file
Additional data file 2:
A mapping file that gives the MI contig number associated with each filename
Format: TAB Size: 22KB Download file
Additional data file 3:
The best match and e-value for the BLASTX search of the WMj dataset against bacteria
Format: TAB Size: 131KB Download file
Additional data file 4:
The best match and e-value for the BLASTX search of the WMj dataset against C. elegans
Format: TAB Size: 219KB Download file
Additional data file 5:
The best match and e-value for the BLASTX search of the WMj dataset against Drosophila
Format: TAB Size: 208KB Download file
Additional data file 6:
The e-value for the best match to bacteria, C. elegans and Drosophila resulting from a TBLASTX search for the NMi dataset
Format: TAB Size: 1.9MB Download file
Additional data file 7:
The e-value for the best match to bacteria, C. elegans and Drosophila resulting from a TBLASTX search for the NMj dataset
Format: TAB Size: 856KB Download file
Additional data file 8:
The e-value for the best match to bacteria, C. elegans and Drosophila resulting from a TBLASTX search for the NMh dataset
Format: TAB Size: 81KB Download file
Additional data file 9:
A text file with details of the data given in additional data files 1-8
Format: TXT Size: 2KB Download file
Additional data file 10:
The alignment in Phylip format used to calculate the NodL tree
Format: PHY Size: 3KB Download file
Additional data file 11:
The alignment in Phylip format of the original sequences, before any manual adjustments were made
Format: PHY Size: 4KB Download file
Additional data file 12:
A key giving the gi number listed in the alignment for each species
Format: TXT Size: 1KB Download file