Table 3 |
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|
List of horizontal gene transfer candidates from M. incognita |
||||
| Best bacterial match |
Best eukaryotic match* |
|||
|
|
||||
| Candidate |
Name |
% identity |
Name |
e-value, %identity |
|
|
||||
| β1,4-endoglucanases |
||||
| MI00537 |
Bacillus sp. KSM-N252 |
(2.7e-24, 40%) |
Orpinomyces joyonii |
(5.6e-10, 32%) |
| MI01011 |
Pseudomonas fluorescens |
(2.5e-75, 47%) |
Orpinomyces joyonii |
(9.4e-41, 36%) |
| MI01381 |
Streptomyces coelicolor |
(6.9e-13, 31%) |
Orpinomyces joyonii |
(0.013, 27%) |
| MI01842 |
Pseudomonas fluorescens |
(1.2e-35, 44%) |
None |
|
| Pectinases |
||||
| MI00252 |
Ralstonia solanacearum |
(8.8e-61, 50%) |
Arabidopsis thaliana |
(5.1e-7, 40%) |
| MI00592 |
Streptomyces coelicolor |
(3.9e-12,31%) |
Fusarium solani |
(1.9e-7, 33%) |
| Rhizobial matches |
||||
| NodL |
Rhizobium leguminosarum |
(8e-54, 58%) |
Saccharomyces cerevisiae |
(5e-38, 46%) |
| Glutamine synthetase |
Mesorhizobium loti |
(9e-45, 56%) |
Blumeria graminis |
(2e-15, 33%) |
| L-Threonine aldolase |
Brucella melitensis |
(1e-23, 48%) |
Leishmania major |
(0.096, 25%) |
| Unknown function |
Sinorhizobium meliloti |
(9e-45, 51%) |
Caenorhabditis elegans |
(3.9, 26%) |
| Unknown function |
||||
| MI01406 |
Amycolatopsis mediterranei |
(4.9e-28, 53%) |
Arabidopsis thaliana |
(2.5e-4, 33%) |
| MI00267 |
Amycolatopsis mediterranei |
(3.0e-28, 58%) |
Aspergillus fumigatus |
(5.4e-6, 32%) |
|
|
||||
|
The best bacterial and eukaryotic matches are listed with their e-values from a BLASTX search and percent identity as reported by BLAST. *Best match to any eukaryote other than a plant-parasitic nematode. |
||||
|
Scholl et al. Genome Biology 2003 4:R39 doi:10.1186/gb-2003-4-6-r39 |
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