Method
A method to assess compositional bias in biological sequences and its application to prion-like glutamine/asparagine-rich domains in eukaryotic proteomes
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* Corresponding author: Paul M Harrison harrison@csb.yale.edu
Department of Molecular Biophysics and Biochemistry, Yale University, 266 Whitney Avenue, New Haven, CT 06520-8114, USA
Genome Biology 2003, 4:R40 doi:10.1186/gb-2003-4-6-r40
Published: 30 May 2003Additional files
Additional data file 1:
The abundance of biases counted up in different ways for different bias probability thresholds
Format: TXT Size: 3KB Download file
Additional data file 2:
A table showing the number of biased regions for all the eukaryotes (for a uniform probability model)
Format: TXT Size: 1KB Download file
Additional data file 3:
The coordinates of S. cerevisiae (gln+asn)-rich domains
Format: TAB Size: 6KB Download file
Additional data file 4:
The coordinates of S. pombe (gln+asn)-rich domains
Format: TAB Size: 1KB Download file
Additional data file 5:
The coordinates of C. elegans (gln+asn)-rich domains
Format: TAB Size: 12KB Download file
Additional data file 6:
The coordinates of Arabidopsis (gln+asn)-rich domains
Format: TAB Size: 8KB Download file
Additional data file 7:
The coordinates of Drosophila (gln+asn)-rich domains
Format: TAB Size: 61KB Download file
Additional data file 8:
The coordinates of human (gln+asn)-rich domains
Format: TAB Size: 9KB Download file
Additional data file 9:
The sequence of the S. cerevisiae proteome
Format: FASTA Size: 3.1MB Download file
Additional data file 10:
The sequence of the S. pombe proteome
Format: FASTA Size: 2.7MB Download file
Additional data file 11:
The sequence of the C.elegans proteome
Format: FASTA Size: 10.2MB Download file
Additional data file 12:
The sequence of the Arabidopsis> proteome
Format: FASTA Size: 11.7MB Download file
Additional data file 13:
The sequence of the Drosophila proteome
Format: FASTA Size: 8.2MB Download file
Additional data file 14:
The sequence of the human proteome
Format: FASTA Size: 11.9MB Download file