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Open Access Research

Reinvestigation of the Saccharomyces cerevisiae genome annotation by comparison to the genome of a related fungus: Ashbya gossypii

Sophie Brachat1, Fred S Dietrich12, Sylvia Voegeli1, Zhihong Zhang2, Larissa Stuart2, Anita Lerch1, Krista Gates3, Tom Gaffney3 and Peter Philippsen1*

Author Affiliations

1 Institute of Applied Microbiology, Biozentrum der Universit├Ąt Basel, Klingelbergstrasse 70, CH-4056 Basel, Switzerland

2 Department of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, NC 27710-3568, USA

3 Syngenta, Research Triangle Park, NC 27709, USA

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Genome Biology 2003, 4:R45  doi:10.1186/gb-2003-4-7-r45

Published: 25 June 2003

Additional files

Additional data file 1:

A list of the novel S. cerevisiae ORFs for which a syntenic homolog was found in the A. gossypii genome

Format: XLS Size: 20KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional data file 2:

A list of all S. cerevisiae hypothetical ORFs for which a homolog was found in the A. gossypii genome

Format: XLS Size: 131KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional data file 3:

A list of all S. cerevisiae hypothetical ORFs for which no homolog was found in the A. gossypii genome

Format: XLS Size: 109KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional data file 4:

A list of all class C overlaps together with gene sizes, gene functions and overlap directions

Format: XLS Size: 108KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional data file 5:

A list of class D overlaps: none of the two overlapping genes in S. cerevisiae has a homolog in A. gossypii

Format: XLS Size: 35KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional data file 6:

A graphical display of the proposed S. cerevisiae annotation changes based on comparison with A. gossypii

Format: PDF Size: 5.5MB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data

Additional data file 7:

GenBank files for each of the S. cerevisiae chromosomes that take account of the proposed modifications (prior to confirmation of the sequence)

Format: ZIP Size: 4.8MB Download file

Open Data

Additional data file 8:

GenBank files for each A. gossypii genomic locus used to infer annotation corrections in S. cerevisiae

Format: ZIP Size: 294KB Download file

Open Data