Table 3

Size comparison of proposed fused ORF in S. cerevisiae with A. gossypii homolog

S. cerevisiae ORF1

S. cerevisiae ORF2

Fused ORF

A. gossypii

Supporting evidence





Systematic name

Common name

Size (amino acids)

Systematic name

Common name

Size (amino acids)

Size (amino acids)

Reason*

Name

Size (amino acids)


YAR044W

859

YAR042W

256

1,188

FS

AER225W

1,300

Resequenced

YBR074W

103

YBR075W

460

976

2FS

AGL209W

1,012

Resequenced

YBR098W

MMS4

108

YBR100W

112

691

FS

ADL318C

715

YCL001W-A

84

YCL001W-B

153

313

2FS

AAL001W

386

YDR474C

155

YDR475C

JIP4

555

876

2FS

AEL233C

794

YER039C

HVG1

249

YER039C-A

72

341

PS

AFR236C

330

Pseudogene [22]

YFL007W

BLM3

1,804

YFL006W

254

2,143

FS

AGL022W

2,146

[46]

YGL046W

262

YGL045W

229

540

3FS

AFR108W

549

YGR272C

152

YGR271C-A

63

233

FS

ABR143C

214

YJL012C

VTC4

648

YJL012C-A

65

721

FS

AGR316C

714

Resequenced

YJL017W

325

YJL016W

171

561

FS

AGR313W

471

Resequenced

YJL019W

MPS3

620

YJL018W

102

682

FS

AGR312W

617

Resequenced

YJL020C

BBC1

446

YJL021C

710

1,156

FS

AGR306C

924

Resequenced

YJL108C

PRM10

383

YJL107C

387

770

FS

AFR075C

741

Resequenced

YKL199C

YKT9

279

YKL198C

PTK1

399

649

FS

AFR372W

775

Resequenced

YKR103W

1,218

YKR104W

306

1,558

PS

NB§

NB§

YLL017W

SDC25

YLL016W

SDC25

1,252

FS

ADL038W

1,510

Pseudogene (SGD)

YLL052C

AQY2

149

YLL053C

152

286

FS

AGL266C

451

YML002W

737

YML003W

290

1,090

FS

ACR006C

1,072

YMR084W

262

YMR085W

432

719

FS

ABL036C

707

YOL163W

169

YOL162W

215

553

PS

ACL203C

538

Pseudogene [22]

YPR090W

736

YPR089W

155

888

FS

ABR111C

790

Resequenced


*PS, premature STOP codon; FS, frameshift. Agreement with proposal of Blandin et al. [17] and Wood et al. [18]. Novel ORFs identified by Blandin et al. [17]. §No homolog was found in A. gossypii but YKR103W/YKR104W is a member of a gene family including YLL048C and YHL035C for which A. gossypii homologs were found.

Brachat et al. Genome Biology 2003 4:R45   doi:10.1186/gb-2003-4-7-r45

Open Data