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An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR)

Jennifer L Reed1, Thuy D Vo1, Christophe H Schilling2 and Bernhard O Palsson1*

Author Affiliations

1 Department of Bioengineering, University of California, San Diego, Gilman Drive, La Jolla, CA 92092, USA

2 Genomatica, Inc., Morehouse Drive, San Diego, CA 92121, USA

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Genome Biology 2003, 4:R54  doi:10.1186/gb-2003-4-9-r54

Published: 28 August 2003

Additional files

Additional data file 1:

A list of the reactions in iJR904; definitions of the metabolite abbreviations; a list of the exchange fluxes used in simulations and their constraints; a list of the dead end metabolites in the metabolic network; a list of the reactions that were not included from iJE660a and a complete list of the sequence comparison results (including e-values)

Format: XLS Size: 515KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional data file 2:

The JPEG images of all the GPR associations and a detailed document describing how to interpret these images

Format: ZIP Size: 107.6MB Download file

Open Data

Additional data file 3:

Six maps of metabolism which together include all the reactions in iJR904

Format: ZIP Size: 10.4MB Download file

Open Data