The source of laterally transferred genes in bacterial genomes
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* Corresponding author: Vincent Daubin daubin@email.arizona.edu
- † Equal contributors
Genome Biology 2003, 4:R57 doi:10.1186/gb-2003-4-9-r57
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Research article
The power of phylogenetic approaches to detect horizontally transferred genes Maria S Poptsova, J Peter Gogarten BMC Evolutionary Biology 2007, 7:45 (21 March 2007) |
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Correspondence
Systematic overestimation of gene gain through false diagnosis of gene absence Olga Zhaxybayeva, Camilla L Nesbø, W Ford Doolittle Genome Biology 2007, 8:402 (26 February 2007) Usual BLAST-based methods for assessing gene presence and absence lead to systematic overestimation of within-species gene gain by lateral transfer. |
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Research
The role of laterally transferred genes in adaptive evolution Pradeep Marri, Weilong Hao, G Brian Golding BMC Evolutionary Biology 2007, 7(Suppl 1):S8 (8 February 2007) |
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Harshavardhan Doddapaneni, Jiqiang Yao, Hong Lin, M Andrew Walker, Edwin L Civerolo BMC Genomics 2006, 7:225 (1 September 2006) |
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Yanbin Yin, Daniel Fischer BMC Evolutionary Biology 2006, 6:63 (16 August 2006) |
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Research
The genome of Rhizobium leguminosarum has recognizable core and accessory components J Peter W Young, Lisa C Crossman, Andrew WB Johnston, Nicholas R Thomson, Zara F Ghazoui, Katherine H Hull, Margaret Wexler, Andrew RJ Curson, Jonathan D Todd, Philip S Poole, Tim H Mauchline, Alison K East, Michael A Quail, Carol Churcher, Claire Arrowsmith, Inna Cherevach, Tracey Chillingworth, Kay Clarke, Ann Cronin, Paul Davis, Audrey Fraser, Zahra Hance, Heidi Hauser, Kay Jagels, Sharon Moule, Karen Mungall, Halina Norbertczak, Ester Rabbinowitsch, Mandy Sanders, Mark Simmonds, Sally Whitehead, Julian Parkhill et al. Genome Biology 2006, 7:R34 (26 April 2006) The genome sequence of the α-proteobacterial N2-fixing symbiont of legumes, |
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Research article
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Software
Dave MacLeod, Robert L Charlebois, Ford Doolittle, Eric Bapteste BMC Evolutionary Biology 2005, 5:27 (8 April 2005) Two programs, which extract evidence for vertical and lateral inheritance from a set of gene trees relative to a reference tree, enable individual nodes to be examined for congruence or coherence in light of lateral gene transfer and facilitate the comparison of phylogenetic trees and the interpretation of conflicting data.
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Methodology article
SIGI: score-based identification of genomic islands Rainer Merkl BMC Bioinformatics 2004, 5:22 (3 March 2004) |