Table 3 |
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|
Distribution of DAVID's features among related programs |
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|
Exploratory tools |
Annotation tools |
|||||||
|
|
|
|||||||
|
FatiGO |
GoMiner |
MAPPFinder |
ENSMART |
GeneLynx |
MatchMiner |
Resourcerer |
Source |
|
|
|
||||||||
|
DAVID input type |
||||||||
|
|
||||||||
|
Affymetrix probe set |
- |
- |
- |
+* |
- |
+* |
+ |
- |
|
GenBank |
+ |
- |
+ |
+ |
+ |
+ |
+ |
+ |
|
LocusLink |
- |
- |
- |
+ |
+ |
- |
- |
+ |
|
RefSeq |
- |
- |
- |
+ |
+ |
+ |
- |
+ |
|
UniGene |
+ |
- |
- |
- |
+ |
+ |
- |
+ |
|
Additional data input |
- |
- |
- |
- |
- |
- |
- |
- |
|
DAVID annotation type |
||||||||
|
|
||||||||
|
Affymetrix description |
- |
- |
- |
- |
- |
- |
- |
- |
|
GenBank |
- |
- |
- |
+ |
+ |
+ |
+ |
+ |
|
GeneCards |
- |
+ |
- |
- |
+ |
- |
- |
+ |
|
GO |
+ |
+ |
+ |
+ |
+ |
- |
- |
+ |
|
KEGG |
- |
+ |
- |
- |
- |
- |
- |
- |
|
LocusLink |
- |
+ |
- |
+ |
+ |
- |
- |
+ |
|
OMIM |
- |
+ |
- |
+ |
- |
+ |
- |
+ |
|
PFAM |
- |
- |
- |
+ |
- |
- |
- |
- |
|
RefSeq |
- |
+ |
- |
+ |
+ |
+ |
+ |
+ |
|
Functional summaries |
- |
- |
- |
- |
+ |
- |
- |
+ |
|
UniGene |
+ |
+ |
- |
- |
+ |
+ |
+ |
+ |
|
DAVID functionality |
||||||||
|
|
||||||||
|
Annotation tables |
- |
+ |
- |
+ |
+ |
+ |
+ |
+ |
|
Subset traversal of GO hierarchy |
- |
- |
- |
- |
- |
- |
- |
- |
|
Hyperlinked cross-references |
- |
+ |
- |
- |
- |
+ |
+ |
- |
|
Summary graphics |
+ |
+ |
+ |
- |
- |
- |
- |
- |
|
View GO terms in tree view |
+ |
+ |
+ |
- |
- |
- |
- |
+ |
|
View GO terms in DAG view |
- |
+ |
- |
- |
+ |
- |
- |
- |
|
View genes within pathways |
- |
- |
+ |
- |
- |
- |
- |
- |
|
Web-accessible |
+ |
- |
- |
+ |
+ |
+ |
+ |
+ |
|
DAVID species |
||||||||
|
|
||||||||
|
Human |
+ |
+ |
+ |
+ |
+ |
+ |
+ |
+ |
|
Mouse |
+ |
- |
+ |
+ |
+ |
- |
+ |
+ |
|
Rat |
- |
- |
- |
+ |
- |
- |
- |
+ |
|
Fly |
+ |
- |
- |
+ |
- |
- |
- |
- |
|
|
||||||||
|
+ possesses this feature; - does not possess this feature; +* does not include HuFL6800 GeneChip. |
||||||||
|
Dennis et al. Genome Biology 2003 4:R60 doi:10.1186/gb-2003-4-9-r60 |
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