Genome Biology

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Computational prediction of transcription-factor binding site locations

Martha L Bulyk

Genome Biology 2003, 5:201 doi:10.1186/gb-2003-5-1-201

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Prediction of mono- and di-nucleotide-specific DNA-binding sites in proteins using neural networks

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This article is part of a collection on BioSapiens

Finding transcription factor binding sites in regulatory regions of the genome

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Analysis of 280 experimentally-verified cis-regulatory modules from Drosophila reveal features both common to all and unique to distinct subclasses of modules.

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WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequences

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Prediction of a key role of motifs binding E2F and NR2F in down-regulation of numerous genes during the development of the mouse hippocampus

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A survey of motif discovery methods in an integrated framework

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Scoring functions for transcription factor binding site prediction

Markus Friberg, Peter von Rohr, Gaston Gonnet BMC Bioinformatics 2005, 6:84 (4 April 2005)

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Genome2D: a visualization tool for the rapid analysis of bacterial transcriptome data

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