Table 1 |
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|
Results of data filtering and profile inspection |
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|
Spot type |
Number of spots on each array |
Number of profiles after filtering (threshold 2.0) |
Number of profiles matched to a gene |
|
|
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|
ORF |
7,492 (6,398) |
6,031 (5,498) |
5,846 (5,304) |
|
Intergenic |
6,389 |
3,689 |
2,998 |
|
Intron |
157 (133) |
32 |
28 |
|
LTR |
141 |
37 |
6 |
|
Mitochondrial |
138 (71) |
40 (28) |
18 (12) |
|
snRNA/snoRNA |
44 |
3 |
2 |
|
tRNA |
42 |
3 |
0 |
|
Ty |
31 (28) |
12 |
12 |
|
rRNA |
23 (19) |
17 (14) |
17 (14) |
|
Centromeric |
16 |
1 |
0 |
|
Telomeric |
10 |
2 |
1 |
|
Total |
14,483 (13,291) |
9,867 (9,311) |
8,928 (8,377) |
|
|
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|
As these microarrays contained duplicated spots, the parentheses represent the number of unique spots or profiles in the dataset. |
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|
Hurowitz and Brown Genome Biology 2003 5:R2 |
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