Table 1 |
|||
|
Results of data filtering and profile inspection |
|||
| Spot type |
Number of spots on each array |
Number of profiles after filtering (threshold 2.0) |
Number of profiles matched to a gene |
|
|
|||
| ORF |
7,492 (6,398) |
6,031 (5,498) |
5,846 (5,304) |
| Intergenic |
6,389 |
3,689 |
2,998 |
| Intron |
157 (133) |
32 |
28 |
| LTR |
141 |
37 |
6 |
| Mitochondrial |
138 (71) |
40 (28) |
18 (12) |
| snRNA/snoRNA |
44 |
3 |
2 |
| tRNA |
42 |
3 |
0 |
| Ty |
31 (28) |
12 |
12 |
| rRNA |
23 (19) |
17 (14) |
17 (14) |
| Centromeric |
16 |
1 |
0 |
| Telomeric |
10 |
2 |
1 |
| Total |
14,483 (13,291) |
9,867 (9,311) |
8,928 (8,377) |
|
|
|||
|
As these microarrays contained duplicated spots, the parentheses represent the number of unique spots or profiles in the dataset. |
|||
|
Hurowitz and Brown Genome Biology 2003 5:R2 |
|||
