A comprehensive transcript index of the human genome generated using microarrays and computational approaches
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* Corresponding authors: Eric E Schadt eric_schadt@merck.com - Daniel D Shoemaker shoemakd@stanfordalumni.org
- † Equal contributors
Genome Biology 2004, 5:R73 doi:10.1186/gb-2004-5-10-r73
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BioMed Central: 13 citations
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Research article
Comparison and consolidation of microarray data sets of human tissue expression Jenny Russ, Matthias E Futschik BMC Genomics 2010, 11:305 (14 May 2010) |
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Research
High-resolution transcription atlas of the mitotic cell cycle in budding yeast Marina V Granovskaia, Lars J Jensen, Matthew E Ritchie, Joern Toedling, Ye Ning, Peer Bork, Wolfgang Huber, Lars M Steinmetz Genome Biology 2010, 11:R24 (1 March 2010) A high resolution strand-specific transcriptional atlas of the budding yeast mitotic cell cycle, including both mRNA and non-coding RNA profiles. |
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Research article
Conservation of core gene expression in vertebrate tissues Esther T Chan, Gerald T Quon, Gordon Chua, Tomas Babak, Miles Trochesset, Ralph A Zirngibl, Jane Aubin, Michael JH Ratcliffe, Andrew Wilde, Michael Brudno, Quaid D Morris, Timothy R Hughes Journal of Biology 2009, 8:33 (16 April 2009) High conservation of tissue-specific expression is found across vertebrates yet there is a lack of conservation in common regulatory sequences/signatures.
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Research
Exploring the transcriptional landscape of plant circadian rhythms using genome tiling arrays Samuel P Hazen, Felix Naef, Tom Quisel, Joshua M Gendron, Huaming Chen, Joseph R Ecker, Justin O Borevitz, Steve A Kay Genome Biology 2009, 10:R17 (11 February 2009) Whole genome tiling array analysis reveals the extent of transcriptional oscillation for both coding and non-coding genes in regulating Arabidopsis thaliana circadian rhythms |
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Methodology article
Deep analysis of cellular transcriptomes – LongSAGE versus classic MPSS Lawrence Hene, Vattipally B Sreenu, Mai T Vuong, S Hussain I Abidi, Julian K Sutton, Sarah L Rowland-Jones, Simon J Davis, Edward J Evans BMC Genomics 2007, 8:333 (24 September 2007) |
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Research article
Joseph C Lee, David Stiles, Jun Lu, Margaret C Cam BMC Genomics 2007, 8:284 (20 August 2007) |
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Methodology article
An efficient pseudomedian filter for tiling microrrays Thomas E Royce, Nicholas J Carriero, Mark B Gerstein BMC Bioinformatics 2007, 8:186 (7 June 2007) |
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Research
Discovery of tissue-specific exons using comprehensive human exon microarrays Tyson A Clark, Anthony C Schweitzer, Tina X Chen, Michelle K Staples, Gang Lu, Hui Wang, Alan Williams, John E Blume Genome Biology 2007, 8:R64 (24 April 2007) Comprehensive exon microarrays with a simple intra-gene normalization algorithm were used to detect human tissue-specific alternative splicing events, suggesting significant expression outside of known exons and well annotated genes and a high frequency of alternative splicing events. |
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Research
Zhaolei Zhang, Andy Pang, Mark Gerstein BMC Evolutionary Biology 2007, 7(Suppl 1):S14 (8 February 2007) |
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Research article
Debraj GuhaThakurta, Tao Xie, Manish Anand, Stephen W Edwards, Guoya Li, Susanna S Wang, Eric E Schadt BMC Genomics 2006, 7:235 (15 September 2006) |
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Method
Detecting transcriptionally active regions using genomic tiling arrays Gabor Halasz, Marinus F van Batenburg, Joelle Perusse, Sujun Hua, Xiang-Jun Lu, Kevin P White, Harmen J Bussemaker Genome Biology 2006, 7:R59 (19 July 2006) A new method for designing and integrating genomic tiling array data is described and applied to Anopheles and human arrays. |
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Method
Transcript copy number estimation using a mouse whole-genome oligonucleotide microarray Mark G Carter, Alexei A Sharov, Vincent VanBuren, Dawood B Dudekula, Condie E Carmack, Charlie Nelson, Minoru SH Ko Genome Biology 2005, 6:R61 (30 June 2005) An |
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Research news
Co-regulation of mouse genes predicts function Jonathan B Weitzman Journal of Biology 2004, 3:19 (6 December 2004) |
