Table 1 |
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|
Comparison of locus projections in the PTI on chromosomes 20 and 22 to Sanger-annotated genes |
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| Sanger chromosome 20, genes |
Non-Sanger chromosome 20, genes |
Sanger chromosome 22, genes |
Non-Sanger chromosome 22, genes |
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|
|
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| Sanger genes (including pseudogenes) |
1,297 |
936 |
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| Locus projection categories |
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| High-confidence categories |
RefSeq |
676 (30) |
8 |
375 (47) |
12 |
| Ab initio + expressed sequence + protein |
336 (63) |
10 |
285 (127) |
10 |
|
| Ab initio + expressed sequence |
38 (2) |
96 |
28 (7) |
74 |
|
| Ab initio + protein |
28 (11) |
37 |
31 (18) |
29 |
|
| Expressed sequence + protein |
38 (30) |
37 |
36 (30) |
24 |
|
| Low-confidence categories |
Ab initio |
22 (4) |
674 |
50 (21) |
362 |
| Protein |
17 (14) |
157 |
18 (13) |
121 |
|
| Expressed sequence |
22 (2) |
1,591 |
31 (7) |
1,127 |
|
| Higher-confidence categories |
1,116 (136) |
188 |
755 (229) |
149 |
|
| All categories |
1,177 (156) |
2,610 |
854 (270) |
1,759 |
|
|
|
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|
Columns 1 and 3 provide the number of locus projections in the PTI set that overlap Sanger genes for chromosomes 20 and 22, respectively. The numbers given in parentheses indicate the number of Sanger-annotated pseudogenes; these pseudogenes were not used when summarizing the results. Columns 2 and 4 give the number of genes in the PTI set that were not overlapping Sanger genes. |
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|
Schadt et al. Genome Biology 2004 5:R73 doi:10.1186/gb-2004-5-10-r73 |
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