Variation in alternative splicing across human tissues
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* Corresponding author: Christopher B Burge cburge@mit.edu
- Equal contributors
Genome Biology 2004, 5:R74 doi:10.1186/gb-2004-5-10-r74
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BioMed Central: 19 citations
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The relationship between proteome size, structural disorder and organism complexity Eva Schad, Peter Tompa, Hedi Hegyi Genome Biology 2011, 12:R120 (19 December 2011) Complexity is a multi-parametric trait, determined by interaction potential, alternative splicing capacity, protein disorder and, above all, proteome size
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Pingzhang Wang, Peng Yu, Peng Gao, Taiping Shi, Dalong Ma BMC Genomics 2009, 10:518 (12 November 2009) |
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Xin Wang, Kejun Wang, Milan Radovich, Yue Wang, Guohua Wang, Weixing Feng, Jeremy R Sanford, Yunlong Liu BMC Genomics 2009, 10(Suppl 1):S4 (7 July 2009) |
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Differential splicing using whole-transcript microarrays Mark D Robinson, Terence P Speed BMC Bioinformatics 2009, 10:156 (22 May 2009) The Affymetrix GeneChip microarray platform, widely used to assay gene expression, can also detect differential splicing events with the help of a new statistical method called FIRMAGene that analyses information from poorly fitting adjacent probes.
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GarlicESTdb: an online database and mining tool for garlic EST sequences Dae-Won Kim, Tae-Sung Jung, Seong-Hyeuk Nam, Hyuk-Ryul Kwon, Aeri Kim, Sung-Hwa Chae, Sang-Haeng Choi, Dong-Wook Kim, Ryong Kim, Hong-Seog Park BMC Plant Biology 2009, 9:61 (18 May 2009) |
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A family of splice variants of CstF-64 expressed in vertebrate nervous systems Ganesh S Shankarling, Penelope W Coates, Brinda Dass, Clinton C MacDonald BMC Molecular Biology 2009, 10:22 (12 March 2009) |
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Prediction of alternatively skipped exons and splicing enhancers from exon junction arrays Katerina Kechris, Yee Yang, Ru-Fang Yeh BMC Genomics 2008, 9:551 (20 November 2008) |
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Global analysis of aberrant pre-mRNA splicing in glioblastoma using exon expression arrays Hannah C Cheung, Keith A Baggerly, Spiridon Tsavachidis, Linda L Bachinski, Valerie L Neubauer, Tamara J Nixon, Kenneth D Aldape, Gilbert J Cote, Ralf Krahe BMC Genomics 2008, 9:216 (12 May 2008) |
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Comparative analysis of sequence features involved in the recognition of tandem splice sites Ralf Bortfeldt, Stefanie Schindler, Karol Szafranski, Stefan Schuster, Dirk Holste BMC Genomics 2008, 9:202 (30 April 2008) |
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Joseph C Lee, David Stiles, Jun Lu, Margaret C Cam BMC Genomics 2007, 8:284 (20 August 2007) |
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Functional coordination of alternative splicing in the mammalian central nervous system Matthew Fagnani, Yoseph Barash, Joanna Y Ip, Christine Misquitta, Qun Pan, Arneet L Saltzman, Ofer Shai, Leo Lee, Aviad Rozenhek, Naveed Mohammad, Sandrine Willaime-Morawek, Tomas Babak, Wen Zhang, Timothy R Hughes, Derek van der Kooy, Brendan J Frey, Benjamin J Blencowe Genome Biology 2007, 8:R108 (12 June 2007) A microarray analysis provides new evidence suggesting that specific cellular processes in the mammalian CNS are coordinated at the level of alternative splicing, and that a complex splicing code underlies CNS-specific alternative splicing regulation. |
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Pierre de la Grange, Martin Dutertre, Margot Correa, Didier Auboeuf BMC Bioinformatics 2007, 8:180 (4 June 2007) |
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Jelena Stojic, Heidi Stöhr, Bernhard HF Weber BMC Molecular Biology 2007, 8:42 (23 May 2007) |
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Discovery of tissue-specific exons using comprehensive human exon microarrays Tyson A Clark, Anthony C Schweitzer, Tina X Chen, Michelle K Staples, Gang Lu, Hui Wang, Alan Williams, John E Blume Genome Biology 2007, 8:R64 (24 April 2007) Comprehensive exon microarrays with a simple intra-gene normalization algorithm were used to detect human tissue-specific alternative splicing events, suggesting significant expression outside of known exons and well annotated genes and a high frequency of alternative splicing events. |
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Comprehensive analysis of alternative splicing in rice and comparative analyses with Arabidopsis Matthew A Campbell, Brian J Haas, John P Hamilton, Stephen M Mount, C Robin Buell BMC Genomics 2006, 7:327 (28 December 2006) |
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Patrizia Lastella, Nicoletta Surdo, Nicoletta Resta, Ginevra Guanti, Alessandro Stella BMC Genomics 2006, 7:243 (22 September 2006) |
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The effects of multiple features of alternatively spliced exons on the KA/KS ratio test Feng-Chi Chen, Trees-Juen Chuang BMC Bioinformatics 2006, 7:259 (19 May 2006) |
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Erdahl T Teber, Edward Crawford, Kent B Bolton, Derek Van Dyk, Peter R Schofield, Vimal Kapoor, W Bret Church BMC Bioinformatics 2006, 7:33 (23 January 2006) |
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Biased alternative polyadenylation in human tissues Haibo Zhang, Ju Lee, Bin Tian Genome Biology 2005, 6:R100 (28 November 2005) Bioinformatic analyses of the occurrence and mechanism of alternative polyadenylation in different human tissues reveals systematic differences among tissues and suggests the involvement of both |