Genome Biology

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Alternative splicing of mouse transcription factors affects their DNA-binding domain architecture and is tissue specific

Bahar Taneri, Ben Snyder, Alexey Novoradovsky and Terry Gaasterland*

Genome Biology 2004, 5:R75 doi:10.1186/gb-2004-5-10-r75

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Poster presentation   Open Access

Functional variation of alternative splice forms in their protein interaction networks: a literature mining approach

Şenay Kafkas, Ekrem Varoğlu, Dietrich Rebholz-Schuhmann, Bahar Taneri BMC Bioinformatics 2010, 11(Suppl 5):P1 (6 October 2010)

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Comparative analysis indicates that alternative splicing in plants has a limited role in functional expansion of the proteome

Edouard I Severing, Aalt DJ van Dijk, Willem J Stiekema, Roeland CHJ van Ham BMC Genomics 2009, 10:154 (9 April 2009)

Research article   Open Access

Splice-mediated Variants of Proteins (SpliVaP) – data and characterization of changes in signatures among protein isoforms due to alternative splicing

Matteo Floris, Massimiliano Orsini, Thangavel Thanaraj BMC Genomics 2008, 9:453 (2 October 2008)

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Functional and evolutionary analysis of alternatively spliced genes is consistent with an early eukaryotic origin of alternative splicing

Manuel Irimia, Jakob Rukov, David Penny, Scott Roy BMC Evolutionary Biology 2007, 7:188 (4 October 2007)

Research article   Open Access

Alternative splicing of c-fos pre-mRNA: contribution of the rates of synthesis and degradation to the copy number of each transcript isoform and detection of a truncated c-Fos immunoreactive species

Juan Jurado, Carlos A Fuentes-Almagro, María J Prieto-Álamo, Carmen Pueyo BMC Molecular Biology 2007, 8:83 (21 September 2007)

Methodology   Open Access Highly Accessed

A quantitative RT-PCR platform for high-throughput expression profiling of 2500 rice transcription factors

Camila Caldana, Wolf-Rüdiger Scheible, Bernd Mueller-Roeber, Slobodan Ruzicic Plant Methods 2007, 3:7 (8 June 2007)

Research article   Open Access

Structure function analysis of SH2D2A isoforms expressed in T cells reveals a crucial role for the proline rich region encoded by SH2D2A exon 7

Stine Granum, Vibeke Sundvold-Gjerstad, Ke-Zheng Dai, Kristin Kolltveit, Kjersti Hildebrand, Henrik S Huitfeldt, Tor Lea, Anne Spurkland BMC Immunology 2006, 7:15 (13 July 2006)

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A compendium of Caenorhabditis elegans regulatory transcription factors: a resource for mapping transcription regulatory networks

John S Reece-Hoyes, Bart Deplancke, Jane Shingles, Christian A Grove, Ian A Hope, Albertha JM Walhout Genome Biology 2005, 6:R110 (30 December 2005)

A compendium of 934 transcription factor genes in C. elegans and identified by computational searches and extensive manual