Genome Biology

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Open Access Research

Genomic neighborhoods for Arabidopsis retrotransposons: a role for targeted integration in the distribution of the Metaviridae

Brooke D Peterson-Burch1, Dan Nettleton2 and Daniel F Voytas3*

Author Affiliations

1 National Animal Disease Center, 2300 N Dayton Ave, Ames, IA 50010, USA

2 Department of Statistics, 124 Snedecor Hall, Iowa State University, Ames, IA 50011, USA

3 Department of Genetics, Development and Cell Biology, 1035A Roy J. Carver Co-Lab, Iowa State University, Ames, IA 50011, USA

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Genome Biology 2004, 5:R78 doi:10.1186/gb-2004-5-10-r78

Published: 29 September 2004

Additional files

Additional data file 1:

A Microsoft Excel spreadsheet of data generated by RetroMap for each retrotransposon insertion identified; the data in this file was used for all statistical analyses

Format: XLS Size: 2.5MB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional data file 2:

The Java application used to generate the LTR and retrotransposon coordinates and to estimate retrotransposon ages

Format: JAR Size: 624KB Download file

Open Data