Table 1 |
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|
Retroelement species used as BLAST probes |
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| Element |
GenBank accession number |
Host organism |
Family |
Genus |
Length (nucleotides) |
LTR identity (length in nucleotides) |
|
|
||||||
| Athila4-6 |
AF296831 |
Arabidopsis thaliana |
MV |
Metavirus |
14,016 |
98.2 (1747) |
| Cer1 |
U15406 |
Caenorhabditis elegans |
MV |
Metavirus |
8,865 |
100.0 (492) |
| Osvaldo |
AJ133521 |
Drosophila buzzatii |
MV |
Metavirus |
9,045 |
99.9 (1196) |
| Sushi |
AF030881 |
Fugu rubripes |
MV |
Metavirus |
5,645 |
91.0 (610) |
| Tf1 |
M38526 |
Schizosaccharomyces pombe |
MV |
Metavirus |
4,941 |
100.0 (358) |
| Ty3 |
M23367 |
Saccharomyces cerevisiae |
MV |
Metavirus |
5,428 |
100.0 (340) |
| Art1 |
Y08010 |
A. thaliana |
PV |
Pseudovirus |
4,793 |
99.8 (439) |
| Copia |
M11240 |
Drosophila melanogaster |
PV |
Hemivirus |
5,416 |
100.0 (276) |
| Endovir1-1 |
AY016208 |
A. thaliana |
PV |
Sirevirus |
9,089 |
99.8 (548) |
| SIRE-1 |
AF053008 |
Glycine max |
PV |
Sirevirus |
10,444 |
100.0 (2149) |
| Tca2 |
AF050215 |
Candida albicans |
PV |
Hemivirus |
6,428 |
100.0 (280) |
| Tca5 |
AF065434 |
C. albicans |
PV |
Hemivirus |
5,588 |
100.0 (685) |
| Jockey |
M22874 |
D. melanogaster |
NL |
- |
5154 |
- |
| L1.2 |
M80343 |
Homo sapiens |
NL |
- |
6,050 |
- |
| R1 |
X51968 |
D. melanogaster |
NL |
- |
5356 |
- |
| R2 |
X51967 |
D. melanogaster |
NL |
- |
3,607 |
- |
| Ta11 |
L47193 |
A. thaliana |
NL |
- |
7,808 |
- |
|
|
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|
MV, Metaviridae; PV, Pseudoviridae; NL, non-LTR retrotransposon. |
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|
Peterson-Burch et al. Genome Biology 2004 5:R78 doi:10.1186/gb-2004-5-10-r78 |
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