Table 1 |
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Details of the sequences used for the phylogenetic tree in Figure 2 |
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| Organism name* |
Kingdom |
Accession number |
|
|
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| Mus musculus (mouse) |
Eukaryote |
XM_127496 |
| Mesocricetus auratus (hamster) |
Eukaryote |
X00494 |
| Rattus norvegicus (rat) |
Eukaryote |
BC064654 |
| Homo sapiens (human) |
Eukaryote |
NM_000859 |
| Gallus gallus (chicken) |
Eukaryote |
AB109635 |
| Xenopus laevis (frog) |
Eukaryote |
M29258 |
| Drosophila melanogaster (fruit fly) |
Eukaryote |
NM_206548 |
| Homarus americanus (lobster) |
Eukaryote |
AY292877 |
| Blatella germanica (cockroach) |
Eukaryote |
X70034 |
| Dendroctonus jeffreyi (Jeffrey pine beetle) |
Eukaryote |
AF159136 |
| Ips pini (bark beetle) |
Eukaryote |
AF304440 |
| Ips paraconfusus (bark beetle) |
Eukaryote |
AF071750 |
| Raphanus sativus (radish) |
Eukaryote |
X68651 |
| Arabidopsis thaliana (thale-cress) |
Eukaryote |
NM_106299 |
| Oryza sativa (rice) |
Eukaryote |
AF110382 |
| Lycopersicon esculentum (tomato) |
Eukaryote |
AAL16927 |
| Nicotinia tabacum (tobacco) |
Eukaryote |
AF004232 |
| Cucumis melo (muskmelon) |
Eukaryote |
AB021862 |
| Hevea brasiliensis (rubber tree) |
Eukaryote |
X54659 |
| Pisum sativum (pea) |
Eukaryote |
AF303583 |
| Solanum tuberosum (potato) |
Eukaryote |
L01400 |
| Tagetes erecta (African marigold) |
Eukaryote |
AF034760 |
| Catharanthus roseus (Madagascar periwinkle) |
Eukaryote |
M96068 |
| Artemisia annua (wormwood) |
Eukaryote |
AF142473 |
| Gossypium hirsutum (cotton) |
Eukaryote |
AF038046 |
| Taxus × media (yew) |
Eukaryote |
AY277740 |
| Andrographis paniculata (Indian herb) |
Eukaryote |
AY254389 |
| Malus × domestica (apple) |
Eukaryote |
AY043490 |
| Capsicum annuum (pepper) |
Eukaryote |
AF110383 |
| Camptotheca acuminata |
Eukaryote |
U72145 |
| Saccharomyces cerevisiae (baker's yeast) |
Eukaryote |
M22002 |
| Schizosaccharomyces pombe (fission yeast) |
Eukaryote |
CAB57937 |
| Candida utilis |
Eukaryote |
AB012603 |
| Trypanosoma cruzi (trypanosome) |
Eukaryote |
L78791 |
| Schistosoma mansoni |
Eukaryote |
M27294 |
| Leishmania major (trypanosome) |
Eukaryote |
AF155593 |
| Dictyostelium discoideum |
Eukaryote |
L19349 |
| Caenorhabditis elegans |
Eukaryote |
NM_066225 |
| Strongylocentrotus purpuratus (sea urchin) |
Eukaryote |
NM_214559 |
| Dicentrarchus labrax (European sea bass) |
Eukaryote |
AY424801 |
| Penicillium citrinum |
Eukaryote |
AB072893 |
| Ustilago maydis |
Eukaryote |
XM_400629 |
| Eremothecium gossypii |
Eukaryote |
NM_210364 |
| Gibberella zeae |
Eukaryote |
XM_389373 |
| Gibberella fujikuroi |
Eukaryote |
X94307 |
| Sphaceloma manihoticola |
Eukaryote |
X94308 |
| Aspergillus nidulans |
Eukaryote |
EAA60025 |
| Neurospora crassa |
Eukaryote |
XM_324891 |
| Phycomyces blakesleeanus |
Eukaryote |
X58371 |
| Archaeoglobus fulgidus |
Archaea |
NC_000917 |
| Sulfolobus solfataricus |
Archaea |
U95360 |
| Oceanobacillus iheyensis |
Archaea |
NC_004193 |
| Thermoplasma volcanium |
Archaea |
BAB60335 |
| Halobacterium sp |
Archaea |
AAG20075 |
| Methanosarcina mazei |
Archaea |
AAM30031 |
| Haloarcula hispanica |
Archaea |
AF123438 |
| Thermoplasma acidophilum |
Archaea |
CAC11548 |
| Picrophilus torridus |
Archaea |
AE017261 |
| Archaeoglobus veneficus |
Archaea |
AJ299204 |
| Ferroglobus placidus |
Archaea |
AJ299206 |
| Archaeoglobus profundus |
Archaea |
AJ299205 |
| Archaeoglobus lithotrophicus |
Archaea |
AJ299203 |
| Haloferax volcanii |
Archaea |
M83531 |
| Pyrococcus furiosus |
Archaea |
AAL81972 |
| Pyrococcus abyssi |
Archaea |
AJ248284 |
| Methanococcus maripaludis |
Archaea |
CAF29643 |
| Methanocaldococcus jannaschii |
Archaea |
AAB98699 |
| Methanosarcina acetivorans |
Archaea |
AAM06446. |
| Methanopyrus kandleri |
Archaea |
AAM01570 |
| Sulfolobus tokodaii |
Archaea |
AP000986 |
| Aeropyrum pernix |
Archaea |
AP000062 |
| Methanothermobacter thermautotrophicus |
Archaea |
AAB85068 |
| Pyrobaculum aerophilum |
Archaea |
AAL64009 |
| Bdellovibrio bacteriovorus |
Eubacteria |
BX842650 |
| Lactobacillus plantarum |
Eubacteria |
AL935253 |
| Streptococcus agalactiae |
Eubacteria |
CAD47046 |
| Lactococcus lactis |
Eubacteria |
AE006387 |
| Vibrio cholerae |
Eubacteria |
AAF96622 |
| Vibrio vulnificus |
Eubacteria |
AAO07090. |
| Vibrio parahaemolyticus |
Eubacteria |
BAC62311 |
| Enterococcus faecalis |
Eubacteria |
AAO81155 |
| Lactobacillus johnsonii |
Eubacteria |
AE017204 |
| Chloroflexus aurantiacus |
Eubacteria |
AJ299212 |
| Enterococcus faecium |
Eubacteria |
AF290094 |
| Listeria monocytogenes |
Eubacteria |
AE017324 |
| Listeria innocua |
Eubacteria |
CAC96053 |
| Streptococcus pneumoniae |
Eubacteria |
AF290098 |
| Staphylococcus epidermidis |
Eubacteria |
AF290090 |
| Staphylococcus haemolyticus |
Eubacteria |
AF290088 |
| Staphylococcus aureus |
Eubacteria |
AF290086 |
| Streptomyces griseolosporeus |
Eubacteria |
AB037907 |
| Streptomyces sp. |
Eubacteria |
AB015627 |
| Streptococcus pyogenes |
Eubacteria |
AF290096 |
| Streptococcus mutans |
Eubacteria |
AAN58647 |
| Paracoccus zeaxanthinifaciens |
Eubacteria |
AJ431696 |
| Pseudomonas mevalonii |
Eubacteria |
M24015 |
| Borrelia burgdorferi |
Eubacteria |
AE001169. |
| Actinoplanes sp. |
Eubacteria |
AB113568 |
|
|
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*Common names are indicated in parentheses Accession numbers for each sequence are available from sequence databases accessible through the National Center for Biotechnology Information [25]. |
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Friesen and Rodwell Genome Biology 2004 5:248 doi:10.1186/gb-2004-5-11-248 |
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