Table 1 |
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Details of the sequences used for the phylogenetic tree in Figure 2 |
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Organism name* |
Kingdom |
Accession number |
|
|
||
|
Mus musculus (mouse) |
Eukaryote |
XM_127496 |
|
Mesocricetus auratus (hamster) |
Eukaryote |
X00494 |
|
Rattus norvegicus (rat) |
Eukaryote |
BC064654 |
|
Homo sapiens (human) |
Eukaryote |
NM_000859 |
|
Gallus gallus (chicken) |
Eukaryote |
AB109635 |
|
Xenopus laevis (frog) |
Eukaryote |
M29258 |
|
Drosophila melanogaster (fruit fly) |
Eukaryote |
NM_206548 |
|
Homarus americanus (lobster) |
Eukaryote |
AY292877 |
|
Blatella germanica (cockroach) |
Eukaryote |
X70034 |
|
Dendroctonus jeffreyi (Jeffrey pine beetle) |
Eukaryote |
AF159136 |
|
Ips pini (bark beetle) |
Eukaryote |
AF304440 |
|
Ips paraconfusus (bark beetle) |
Eukaryote |
AF071750 |
|
Raphanus sativus (radish) |
Eukaryote |
X68651 |
|
Arabidopsis thaliana (thale-cress) |
Eukaryote |
NM_106299 |
|
Oryza sativa (rice) |
Eukaryote |
AF110382 |
|
Lycopersicon esculentum (tomato) |
Eukaryote |
AAL16927 |
|
Nicotinia tabacum (tobacco) |
Eukaryote |
AF004232 |
|
Cucumis melo (muskmelon) |
Eukaryote |
AB021862 |
|
Hevea brasiliensis (rubber tree) |
Eukaryote |
X54659 |
|
Pisum sativum (pea) |
Eukaryote |
AF303583 |
|
Solanum tuberosum (potato) |
Eukaryote |
L01400 |
|
Tagetes erecta (African marigold) |
Eukaryote |
AF034760 |
|
Catharanthus roseus (Madagascar periwinkle) |
Eukaryote |
M96068 |
|
Artemisia annua (wormwood) |
Eukaryote |
AF142473 |
|
Gossypium hirsutum (cotton) |
Eukaryote |
AF038046 |
|
Taxus × media (yew) |
Eukaryote |
AY277740 |
|
Andrographis paniculata (Indian herb) |
Eukaryote |
AY254389 |
|
Malus × domestica (apple) |
Eukaryote |
AY043490 |
|
Capsicum annuum (pepper) |
Eukaryote |
AF110383 |
|
Camptotheca acuminata |
Eukaryote |
U72145 |
|
Saccharomyces cerevisiae (baker's yeast) |
Eukaryote |
M22002 |
|
Schizosaccharomyces pombe (fission yeast) |
Eukaryote |
CAB57937 |
|
Candida utilis |
Eukaryote |
AB012603 |
|
Trypanosoma cruzi (trypanosome) |
Eukaryote |
L78791 |
|
Schistosoma mansoni |
Eukaryote |
M27294 |
|
Leishmania major (trypanosome) |
Eukaryote |
AF155593 |
|
Dictyostelium discoideum |
Eukaryote |
L19349 |
|
Caenorhabditis elegans |
Eukaryote |
NM_066225 |
|
Strongylocentrotus purpuratus (sea urchin) |
Eukaryote |
NM_214559 |
|
Dicentrarchus labrax (European sea bass) |
Eukaryote |
AY424801 |
|
Penicillium citrinum |
Eukaryote |
AB072893 |
|
Ustilago maydis |
Eukaryote |
XM_400629 |
|
Eremothecium gossypii |
Eukaryote |
NM_210364 |
|
Gibberella zeae |
Eukaryote |
XM_389373 |
|
Gibberella fujikuroi |
Eukaryote |
X94307 |
|
Sphaceloma manihoticola |
Eukaryote |
X94308 |
|
Aspergillus nidulans |
Eukaryote |
EAA60025 |
|
Neurospora crassa |
Eukaryote |
XM_324891 |
|
Phycomyces blakesleeanus |
Eukaryote |
X58371 |
|
Archaeoglobus fulgidus |
Archaea |
NC_000917 |
|
Sulfolobus solfataricus |
Archaea |
U95360 |
|
Oceanobacillus iheyensis |
Archaea |
NC_004193 |
|
Thermoplasma volcanium |
Archaea |
BAB60335 |
|
Halobacterium sp |
Archaea |
AAG20075 |
|
Methanosarcina mazei |
Archaea |
AAM30031 |
|
Haloarcula hispanica |
Archaea |
AF123438 |
|
Thermoplasma acidophilum |
Archaea |
CAC11548 |
|
Picrophilus torridus |
Archaea |
AE017261 |
|
Archaeoglobus veneficus |
Archaea |
AJ299204 |
|
Ferroglobus placidus |
Archaea |
AJ299206 |
|
Archaeoglobus profundus |
Archaea |
AJ299205 |
|
Archaeoglobus lithotrophicus |
Archaea |
AJ299203 |
|
Haloferax volcanii |
Archaea |
M83531 |
|
Pyrococcus furiosus |
Archaea |
AAL81972 |
|
Pyrococcus abyssi |
Archaea |
AJ248284 |
|
Methanococcus maripaludis |
Archaea |
CAF29643 |
|
Methanocaldococcus jannaschii |
Archaea |
AAB98699 |
|
Methanosarcina acetivorans |
Archaea |
AAM06446. |
|
Methanopyrus kandleri |
Archaea |
AAM01570 |
|
Sulfolobus tokodaii |
Archaea |
AP000986 |
|
Aeropyrum pernix |
Archaea |
AP000062 |
|
Methanothermobacter thermautotrophicus |
Archaea |
AAB85068 |
|
Pyrobaculum aerophilum |
Archaea |
AAL64009 |
|
Bdellovibrio bacteriovorus |
Eubacteria |
BX842650 |
|
Lactobacillus plantarum |
Eubacteria |
AL935253 |
|
Streptococcus agalactiae |
Eubacteria |
CAD47046 |
|
Lactococcus lactis |
Eubacteria |
AE006387 |
|
Vibrio cholerae |
Eubacteria |
AAF96622 |
|
Vibrio vulnificus |
Eubacteria |
AAO07090. |
|
Vibrio parahaemolyticus |
Eubacteria |
BAC62311 |
|
Enterococcus faecalis |
Eubacteria |
AAO81155 |
|
Lactobacillus johnsonii |
Eubacteria |
AE017204 |
|
Chloroflexus aurantiacus |
Eubacteria |
AJ299212 |
|
Enterococcus faecium |
Eubacteria |
AF290094 |
|
Listeria monocytogenes |
Eubacteria |
AE017324 |
|
Listeria innocua |
Eubacteria |
CAC96053 |
|
Streptococcus pneumoniae |
Eubacteria |
AF290098 |
|
Staphylococcus epidermidis |
Eubacteria |
AF290090 |
|
Staphylococcus haemolyticus |
Eubacteria |
AF290088 |
|
Staphylococcus aureus |
Eubacteria |
AF290086 |
|
Streptomyces griseolosporeus |
Eubacteria |
AB037907 |
|
Streptomyces sp. |
Eubacteria |
AB015627 |
|
Streptococcus pyogenes |
Eubacteria |
AF290096 |
|
Streptococcus mutans |
Eubacteria |
AAN58647 |
|
Paracoccus zeaxanthinifaciens |
Eubacteria |
AJ431696 |
|
Pseudomonas mevalonii |
Eubacteria |
M24015 |
|
Borrelia burgdorferi |
Eubacteria |
AE001169. |
|
Actinoplanes sp. |
Eubacteria |
AB113568 |
|
|
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*Common names are indicated in parentheses Accession numbers for each sequence are available from sequence databases accessible through the National Center for Biotechnology Information [25]. |
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Friesen and Rodwell Genome Biology 2004 5:248 doi:10.1186/gb-2004-5-11-248 |
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