Genome Biology

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Transcriptome analysis of haploid male gametophyte development in Arabidopsis

David Honys and David Twell

Genome Biology 2004, 5:R85 doi:10.1186/gb-2004-5-11-r85

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BioMed Central: 16 citations

Research article   Open Access

A transcriptional dynamic network during Arabidopsis thaliana pollen development

Jigang Wang, Xiaojie Qiu, Yuhua Li, Youping Deng, Tieliu Shi BMC Systems Biology 2011, 5(Suppl 3):S8 (23 December 2011)

Research   Open Access Highly Accessed

Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa

Li Wei, Long Yan, Tai Wang Genome Biology 2011, 12:R53 (16 June 2011)

Deep sequencing reveals miRNAs expressed during rice pollen development

Research article   Open Access Highly Accessed

MicroRNA and tasiRNA diversity in mature pollen of Arabidopsis thaliana

Robert Grant-Downton, Gael Le Trionnaire, Ralf Schmid, Josefina Rodriguez-Enriquez, Said Hafidh, Saher Mehdi, David Twell, Hugh Dickinson BMC Genomics 2009, 10:643 (30 December 2009)

Research   Open Access

Transcriptome analysis of functional differentiation between haploid and diploid cells of Emiliania huxleyi, a globally significant photosynthetic calcifying cell

Peter von Dassow, Hiroyuki Ogata, Ian Probert, Patrick Wincker, Corinne Da Silva, Stéphane Audic, Jean-Michel Claverie, Colomban de Vargas Genome Biology 2009, 10:R114 (15 October 2009)

An EST analysis of the phytoplankton Emiliania huxleyi reveals genes involved in haploid- and diploid-specific processes and provides insights into environmental adaptation.

Research article   Open Access Highly Accessed

Profiling microRNA expression in Arabidopsis pollen using microRNA array and real-time PCR

Carrie Chambers, Bin Shuai BMC Plant Biology 2009, 9:87 (10 July 2009)

Research article   Open Access Highly Accessed

Expression-based discovery of candidate ovule development regulators through transcriptional profiling of ovule mutants

Debra J Skinner, Charles S Gasser BMC Plant Biology 2009, 9:29 (16 March 2009)

Comparison of Arabidopsis mutants 'inner no outer' and 'aintegumenta' with wild-type using microarray analysis identified candidate genes expressed specifically in the integuments of ovules providing a useful resource for functional analysis.

Research article   Open Access Highly Accessed

Genomic expression profiling of mature soybean (Glycine max) pollen

Farzad Haerizadeh, Chui E Wong, Prem L Bhalla, Peter M Gresshoff, Mohan B Singh BMC Plant Biology 2009, 9:25 (6 March 2009)

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Male reproductive development: gene expression profiling of maize anther and pollen ontogeny

Jiong Ma, David S Skibbe, John Fernandes, Virginia Walbot Genome Biology 2008, 9:R181 (19 December 2008)

Analysis of global gene expression profiles of seven stages of maize anther development reveals expression of many genes

Research article   Open Access Highly Accessed

Regulon organization of Arabidopsis

Wieslawa I Mentzen, Eve Wurtele BMC Plant Biology 2008, 8:99 (30 September 2008)

In response to environmental and other experimental perturbations, the Arabidopsis transcriptome shows 998 regulons of co-expressed genes, corresponding to many known biological processes but also including many unannotated genes.

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Characterization of expressed sequence tags from a full-length enriched cDNA library of Cryptomeria japonica male strobili

Norihiro Futamura, Yasushi Totoki, Atsushi Toyoda, Tomohiro Igasaki, Tokihiko Nanjo, Motoaki Seki, Yoshiyuki Sakaki, Adriano Mari, Kazuo Shinozaki, Kenji Shinohara BMC Genomics 2008, 9:383 (11 August 2008)

Research   Open Access

MADS-complexes regulate transcriptome dynamics during pollen maturation

Wim Verelst, David Twell, Stefan de Folter, Richard Immink, Heinz Saedler, Thomas Münster Genome Biology 2007, 8:R249 (22 November 2007)

Pollen transcript profiling of mutants defective in MADS-domain MIKC* protein complexes suggests they control a transcriptional network directing cellular differentiation during pollen maturation.

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Genetic subtraction profiling identifies genes essential for Arabidopsis reproduction and reveals interaction between the female gametophyte and the maternal sporophyte

Amal J Johnston, Patrick Meier, Jacqueline Gheyselinck, Samuel EJ Wuest, Michael Federer, Edith Schlagenhauf, Jörg D Becker, Ueli Grossniklaus Genome Biology 2007, 8:R204 (3 October 2007)

Genetic subtraction and expression profiling of wild-type Arabidopsis and a sporophytic mutant lacking an embryo sac identified 1,260 genes expressed in the embryo sac; a total of 527 genes were identified for their expression in ovules of mutants lacking an embryo sac.

Research article   Open Access

Identification of microspore-active promoters that allow targeted manipulation of gene expression at early stages of microgametogenesis in Arabidopsis

David Honys, Sung-Aeong Oh, David Reňák, Maarten Donders, Blanka Šolcová, James Johnson, Rita Boudová, David Twell BMC Plant Biology 2006, 6:31 (21 December 2006)

Research   Open Access

Generalization of DNA microarray dispersion properties: microarray equivalent of t-distribution

Jaroslav P Novak, Seon-Young Kim, Jun Xu, Olga Modlich, David J Volsky, David Honys, Joan L Slonczewski, Douglas A Bell, Fred R Blattner, Eduardo Blumwald, Marjan Boerma, Manuel Cosio, Zoran Gatalica, Marian Hajduch, Juan Hidalgo, Roderick R McInnes, Merrill C Miller III, Milena Penkowa, Michael S Rolph, Jordan Sottosanto, Rene St-Arnaud, Michael J Szego, David Twell, Charles Wang Biology Direct 2006, 1:27 (7 September 2006)

Methodology   Open Access

ModuleFinder and CoReg: alternative tools for linking gene expression modules with promoter sequences motifs to uncover gene regulation mechanisms in plants

Kathryn E Holt, A Harvey Millar, James Whelan Plant Methods 2006, 2:8 (11 April 2006)

Methodology article   Open Access

Computational and experimental analysis identifies Arabidopsis genes specifically expressed during early seed development

Cristian Becerra, Pere Puigdomenech, Carlos M Vicient BMC Genomics 2006, 7:38 (28 February 2006)