Spatial patterns of transcriptional activity in the chromosome of Escherichia coli
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* Corresponding author: Arkady B Khodursky khodu001@umn.edu
Genome Biology 2004, 5:R86 doi:10.1186/gb-2004-5-11-r86
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BioMed Central: 9 citations
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Rikard Dryselius, Kaori Izutsu, Takeshi Honda, Tetsuya Iida BMC Genomics 2008, 9:559 (26 November 2008) |
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Analyzing stochastic transcription to elucidate the nucleoid's organization Alessandra Riva, Anne-Sophie Carpentier, Frédérique Barloy-Hubler, Angélique Chéron, Alain Hénaut BMC Genomics 2008, 9:125 (10 March 2008) Randomly chosen genes undergoing background or stochastic transcription show distinct patterns of co-transcription, with both short-range and long-range correlation in the distance between genes and influence from the physical constraints that bring about DNA looping.
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Dissecting the logical types of network control in gene expression profiles Carsten Marr, Marcel Geertz, Marc-Thorsten Hütt, Georgi Muskhelishvili BMC Systems Biology 2008, 2:18 (19 February 2008) |
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José Viñuelas, Federica Calevro, Didier Remond, Jacques Bernillon, Yvan Rahbé, Gérard Febvay, Jean-Michel Fayard, Hubert Charles BMC Genomics 2007, 8:143 (4 June 2007) |
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Prediction of highly expressed genes in microbes based on chromatin accessibility Hanni Willenbrock, David W Ussery BMC Molecular Biology 2007, 8:11 (13 February 2007) Bacterial genes are highly expressed if their DNA structure tends to exclude chromatin, an association that is much better at predicting expression levels than codon usage perhaps because the DNA is accessible to transcriptional machinery.
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Methodology article
Srinka Ghosh, Heather A Hirsch, Edward Sekinger, Kevin Struhl, Thomas R Gingeras BMC Bioinformatics 2006, 7:434 (5 October 2006) |
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Methodology article
Operon information improves gene expression estimation for cDNA microarrays Guanghua Xiao, Betsy Martinez-Vaz, Wei Pan, Arkady B Khodursky BMC Genomics 2006, 7:87 (21 April 2006) |
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Anne-Sophie Carpentier, Bruno Torrésani, Alex Grossmann, Alain Hénaut BMC Genomics 2005, 6:84 (6 June 2005) |
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Minireview
Chromatin architecture and gene expression in Escherichia coli Hanni Willenbrock, David W Ussery Genome Biology 2004, 5:252 (1 December 2004) Two recent genome-scale analyses underscore the importance of DNA topology and chromatin structure in regulating transcription in Escherichia coli. |
