Genomic transcriptional response to loss of chromosomal supercoiling in Escherichia coli
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* Corresponding author: Nicholas R Cozzarelli ncozzare@socrates.berkeley.edu
Genome Biology 2004, 5:R87 doi:10.1186/gb-2004-5-11-r87
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Review
Cruciform structures are a common DNA feature important for regulating biological processes Václav Brázda, Rob C Laister, Eva B Jagelská, Cheryl Arrowsmith BMC Molecular Biology 2011, 12:33 (5 August 2011) Cheryl Arrowsmith and colleagues review the role of cruciform structures in the regulation of major biological processes, including DNA replication, transcription, repair, recombination, and chromatin remodeling.
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Research article
Hfq affects mRNA levels independently of degradation Jacques Le Derout, Irina V Boni, Philippe Régnier, Eliane Hajnsdorf BMC Molecular Biology 2010, 11:17 (18 February 2010) |
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Research article
Dissecting the logical types of network control in gene expression profiles Carsten Marr, Marcel Geertz, Marc-Thorsten Hütt, Georgi Muskhelishvili BMC Systems Biology 2008, 2:18 (19 February 2008) |
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Research article
José Viñuelas, Federica Calevro, Didier Remond, Jacques Bernillon, Yvan Rahbé, Gérard Febvay, Jean-Michel Fayard, Hubert Charles BMC Genomics 2007, 8:143 (4 June 2007) |
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Method
A classification based framework for quantitative description of large-scale microarray data Dipen P Sangurdekar, Friedrich Srienc, Arkady B Khodursky Genome Biology 2006, 7:R32 (20 April 2006) A new classification-based framework is presented that allows quantitative description of microarray data in terms of significance of co-expression within any gene group and condition-specific gene class activity. |
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Minireview
Chromatin architecture and gene expression in Escherichia coli Hanni Willenbrock, David W Ussery Genome Biology 2004, 5:252 (1 December 2004) Two recent genome-scale analyses underscore the importance of DNA topology and chromatin structure in regulating transcription in Escherichia coli. |
