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Genomic transcriptional response to loss of chromosomal supercoiling in Escherichia coli

Brian J Peter1,6 email, Javier Arsuaga1,2, Adam M Breier3, Arkady B Khodursky4, Patrick O Brown5 and Nicholas R Cozzarelli1 email

1Department of Molecular and Cell Biology, University of California, Berkeley, CA 94720-3204, USA

2Mathematics Department, University of California, Berkeley, CA 94720, USA

3Graduate Group in Biophysics, University of California, Berkeley, CA 94720, USA

4Department of Biochemistry, Molecular Biology, and Biophysics, University of Minnesota, St. Paul, MN 55108, USA

5Department of Biochemistry and Howard Hughes Medical Institute, Stanford University, Stanford, CA 94305-5307, USA

6Current address: Neurobiology Division, MRC Laboratory of Molecular Biology, Cambridge CB2 2QH, UK

author email corresponding author email

Genome Biology 2004, 5:R87doi:10.1186/gb-2004-5-11-r87

Published: 1 November 2004

Subject areas: Microbiology and parasitology, Molecular biology, Genome studies, Genetics


Additional files

Additional data file 1:

Data on the induction of the SOS response to DNA damage

Format: PDF Size: 309KB Download file

This file can be viewed with: Adobe Acrobat Reader

Additional data file 2:

Gene-expression ratios for all genes across all experiments

Format: XLS Size: 3.2MB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional data file 3:

Gene-expression ratios for supercoiling-sensitive genes across all experiments

Format: XLS Size: 266KB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional data file 4:

Data on the reproducibility of microarray measurement of RNA levels

Format: PDF Size: 753KB Download file

This file can be viewed with: Adobe Acrobat Reader


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