Genome Biology

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Reconstruction of regulatory and metabolic pathways in metal-reducing δ-proteobacteria

Dmitry A Rodionov*, Inna Dubchak, Adam Arkin, Eric Alm and Mikhail S Gelfand

Genome Biology 2004, 5:R90 doi:10.1186/gb-2004-5-11-r90

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Characterization of the biotin uptake system encoded by the biotin-inducible bioYMN operon of Corynebacterium glutamicum

Jens Schneider, Petra Peters-Wendisch, K Corinna Stansen, Susanne Gotker, Stanislav Maximov, Reinhard Kramer, Volker F Wendisch BMC Microbiology 2012, 12:6 (13 January 2012)

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The Zur regulon of Corynebacterium glutamicum ATCC 13032

Jasmin Schröder, Nina Jochmann, Dmitry A Rodionov, Andreas Tauch BMC Genomics 2010, 11:12 (7 January 2010)

Metalloregulator Cg2502, a zinc uptake regulator (Zur) of the ferric uptake regulator family, controls zinc metabolism in Corynebacterium glutamicum by binding the promoters of five transcription units and repressing, in a zinc-dependent manner, the nine genes they contain.

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Comparative genomic analyses of nickel, cobalt and vitamin B12 utilization

Yan Zhang, Dmitry A Rodionov, Mikhail S Gelfand, Vadim N Gladyshev BMC Genomics 2009, 10:78 (10 February 2009)

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On the nature of fur evolution: A phylogenetic approach in Actinobacteria

Catarina L Santos, João Vieira, Fernando Tavares, David R Benson, Louis S Tisa, Alison M Berry, Pedro Moradas-Ferreira, Philippe Normand BMC Evolutionary Biology 2008, 8:185 (25 June 2008)

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The distributions, mechanisms, and structures of metabolite-binding riboswitches

Jeffrey E Barrick, Ronald R Breaker Genome Biology 2007, 8:R239 (12 November 2007)

Phylogenetic analyses revealed insights into the distribution of riboswitch classes in different microbial groups, and structural analyses led to updated aptamer structure models and insights into the mechanism of these non-coding RNA structures.