Table 1

Candidate binding sites for the biotin repressor BirA

Gene

Site

Position*

Score


Desulfuromonas sp.

387978

bioW

aTGTcAACC-[N14]-GGTTgACAg

-63

8.61

390011

bioB

acGTcAACC-[N14]-GGTTgACAA

-94

8.13

Geobacter sulfurreducens PCA

381880

bioB

TTGTcAACC-[N14]-aGTTgACAA

-78

8.50

382941

bioF

TTGTcAACC-[N14]-GGTTgACgA

-182

8.29

Geobacter metallireducens

377241

bioB

TTGTtAACC-[N14]-aGTTgACAA

-76

7.81

377542

bioF

TTGTcAACC-[N14]-GGTTgACgA

-64

8.29

Desulfovibrio vulgaris

208055

bioB

TTGTAAACC-[N15]-cGTTgACAg

6

8.39

Desulfovibrio desulfuricans G20

394249

bioB

TTGTAAACC-[N15]-aGTTgACAA

-119

8.60

Desulfotalea psychrophila

425025

bioB

TTGTAAAtt-[N15]-ccaTTACAg

233

6.19


*Position relative to the start of translation. Lower case letters represent positions that do not conform to the consensus sequence.

Rodionov et al. Genome Biology 2004 5:R90   doi:10.1186/gb-2004-5-11-r90

Open Data