Table 1 |
||||
|
Candidate binding sites for the biotin repressor BirA |
||||
| Gene |
Site |
Position* |
Score |
|
|
|
||||
| Desulfuromonas sp. |
||||
| 387978 |
bioW |
aTGTcAACC-[N14]-GGTTgACAg |
-63 |
8.61 |
| 390011 |
bioB |
acGTcAACC-[N14]-GGTTgACAA |
-94 |
8.13 |
| Geobacter sulfurreducens PCA |
||||
| 381880 |
bioB |
TTGTcAACC-[N14]-aGTTgACAA |
-78 |
8.50 |
| 382941 |
bioF |
TTGTcAACC-[N14]-GGTTgACgA |
-182 |
8.29 |
| Geobacter metallireducens |
||||
| 377241 |
bioB |
TTGTtAACC-[N14]-aGTTgACAA |
-76 |
7.81 |
| 377542 |
bioF |
TTGTcAACC-[N14]-GGTTgACgA |
-64 |
8.29 |
| Desulfovibrio vulgaris |
||||
| 208055 |
bioB |
TTGTAAACC-[N15]-cGTTgACAg |
6 |
8.39 |
| Desulfovibrio desulfuricans G20 |
||||
| 394249 |
bioB |
TTGTAAACC-[N15]-aGTTgACAA |
-119 |
8.60 |
| Desulfotalea psychrophila |
||||
| 425025 |
bioB |
TTGTAAAtt-[N15]-ccaTTACAg |
233 |
6.19 |
|
|
||||
|
*Position relative to the start of translation. Lower case letters represent positions that do not conform to the consensus sequence. |
||||
|
Rodionov et al. Genome Biology 2004 5:R90 doi:10.1186/gb-2004-5-11-r90 |
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